| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3808 |
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| Symbol | |
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| ID | 5610742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4641624 |
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| End bp | 4643006 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934762 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475540 |
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| Protein GI | 157376940 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3713] Outer membrane protein V |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00681212 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAATA ACTCCCTACT CATTAGCTCT ATTTTCGCGC TAATCCTCCC AAGCATAGTG
TTCGCTTCTT CCGATAACGA GGAGGGCCAC GAACTTGGCG AACCACAAAC TCAGGTTTAC
GCAACCCAAT ATCAAGCTGA AAATTGGGGT CTTGCGATGG GAGTAAGACG GGGAGATATT
CCCTTTGCCG TCGACGATGA TAGCGTTAAC GATATTCTTC CTTTAATCAA GTTCAGAAAC
GACTACTTCT TTGTCGATGG CATGGAAGCA GGAGCACATA TTTGGAAAAA TGAGAATCAT
CAGGTCAACG CCTACACCCG CTTCAGGTTT GTCGATATTC CTACAGAGTT GCAAAATGAA
TCTCAGTCTC AGGCATTCGA TTTCGGCCTC CAATACCGAT TTATCAAGGG GCCATGGGAA
GCCGATGTCG CATTCATGGC CGATTCGAAC AAACGCAGTT ATGGTTATTC ACGAACCAAA
TACCATTGGG AGTCCGGTGA CTGGTACCTC AGCCCTTATG CCGAGTTAAA TTGGAAGAGT
GCTGATTTCA ATCAGTTTTA CTATGGCTTA GAACAATATG ATACCTCAGG TGGGGTAGAG
GTTAATGCCG GCATCACCGC ACGCTATCAC CTTGTCAGTA ATCTCTATCT GTTAGGCAAG
TTTGGCGTGG GACGACTCGA AGATGATATC GTCAACCTGC CAACCATTGA GAACCAGTAT
CAATATGAAT CATTTTTTGG TTTCGGATTC TATCCCGATT CAGGCAAGAA GAAAGCCACA
AATTCATACT CTGATTCAAA CTCAAAATTA CCCCATGAGG CCGACTCTGA TGATGAGTTT
ATAAGAGTTG CCCATGGTTG GGCGACCCCA TCGAACCTTA ATGCCATCTT GTCATGGCAG
ACCAAAACCG ATCCCTATAA TAACCAGCTC ACTTCGGTAT TCTATGGTAC GCGACTCACC
GAGACCCTCT TTACTCTGCC GATAGAGCTC TATTTCACCC CTGGTGCTGT TTGGCACCAC
GACTCTGAAG TTCAGGGGAA CCTTGCCGAA GGCGTGGTGG CCATCAAGGC ATTTTACACC
TTCGAGATTG GGCCAAGATG GCGCTTAGGT GTGGCAGAGG GTCTCTCCTA TGTCAGCAGC
GTCACTCACA TCGAAGGGAC TGAGATGGAA GAGAAAGGCT ATAAGCCCTC TAAGCTGCTT
AACTATTTAG ACTTTTCATT AGATGTGAAT ATGGGAGATC TGTTTAAAAG TAGTCATTTA
AGCAATATGT GGATGGGTTA CAGCATTCAC CATAGATCCG GCATTTATGA GAAAAGCTCT
GCCTTCGGTC GTATCGGTGG TGGCAGTAAC TATCAAACCC TCTACCTTCA GTGGCATTTC
TAA
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| Protein sequence | MKNNSLLISS IFALILPSIV FASSDNEEGH ELGEPQTQVY ATQYQAENWG LAMGVRRGDI
PFAVDDDSVN DILPLIKFRN DYFFVDGMEA GAHIWKNENH QVNAYTRFRF VDIPTELQNE
SQSQAFDFGL QYRFIKGPWE ADVAFMADSN KRSYGYSRTK YHWESGDWYL SPYAELNWKS
ADFNQFYYGL EQYDTSGGVE VNAGITARYH LVSNLYLLGK FGVGRLEDDI VNLPTIENQY
QYESFFGFGF YPDSGKKKAT NSYSDSNSKL PHEADSDDEF IRVAHGWATP SNLNAILSWQ
TKTDPYNNQL TSVFYGTRLT ETLFTLPIEL YFTPGAVWHH DSEVQGNLAE GVVAIKAFYT
FEIGPRWRLG VAEGLSYVSS VTHIEGTEME EKGYKPSKLL NYLDFSLDVN MGDLFKSSHL
SNMWMGYSIH HRSGIYEKSS AFGRIGGGSN YQTLYLQWHF
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