| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3784 |
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| Symbol | |
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| ID | 5612560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4612666 |
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| End bp | 4614315 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934738 |
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| Product | putative sensory transduction system, regulatory protein |
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| Protein accession | YP_001475516 |
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| Protein GI | 157376916 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATAT CTAACTCCTA TACGCGTTAT ATTATCTTAT TCTCAGTATC GATTGGCATA
CTGCTTTCCG GGTTGATTGG CTACAGCTTT TATCAGAAAG AGACGCAGGC CATTGAGGCT
GATTTCAGAA GCGATGTTGA TGATAAAGCA TCAGCCTTAG AGCGTGAACT CTTGCTGAAA
TCAGAAGTGT TATATGCACT TAAGGGCTTG TTCGACAGTT CTGAAAATGT CACGGCACAA
GAGTTTAACA GGCTGGCGAG TGGTTTCTTA ATTCGGCATC AGGACATTCA GGCACTTGAG
TGGATCCCTA AGGTTATTCA GGATCACAGA GATGCCTATG AACAGGCTGG TAGACGCATG
CATCCGGATT TTGAATTTAC AGAGCGCGAG TCTCAAGGTC GTATGGTCCG GGCCTCAGAG
CGCGCCGTAT ATTTCCCTGT CTACTATGCG GAGCCTCTGA AGGGGAATGA AGTGGCTCTG
GGCTTCGATC TCGCTTCTGA TGAAAAAAGA CTAAAAATAA TCAATAAATC AAGAGACTTA
GATCTGTCTC TGGCAACAGA AAGTATCAGA TTGGTTCAAG AGACCTCAGA TCAACGAGGG
GTGCTTGTTT TTATGCCTAT CTATGACGGT GAACCTACTA CGCTGAAAAA GCGTCGAGAA
AAATTTTTGG GGTTTGTGCT TGGCGTGTAT CGAATTGGTG AAATATTTGA AGCCGCGGTT
AGGCATACCA GTGTACAAGG ACTCAACCTG AGTCTGATTG ATAATACCGG TATCGAGGCG
GCTCAACTCT ATGCCAACTT TTCCACCGAC CAAGCTCAAG GTATGGCATC AGTTGAATTT
AACTACAGCA AGCCTTTACG CCGTTTCGGT GGACGACAAT GGACGCTTGT GGCCACTCCT
AGCTTAGGCT ATGTCGTCGA ACGCAGAAGC TTACTGCCCT TGATGAGCGG CAGCTTCTGT
ATCTTGTTTG TACTGCTTGT CGGCGCCTAT CTCTATGCTG TCATGAAACA TTCGGTTCTT
ATTGAGGCCG AAGTGTTTGA ACGTACCCAA GCTTTGCATA AAGCTAAGCA GGCATTGAAG
GATACAGCTC TTATCGATGG ACTGACCAAG GTGGCTAATC GTCGGCAATT TGATGCTCAA
TATGAGACCG AATGGTTGAG GGCTATTCGC GATGGCAGCT CGTTGTCGTT AATCATGATA
GAGGTTGATC ATTTCAAGTT ATACAAGGCG CATTATGGTG ACAGTGCGGG CGATCAGTGT
TTAAAGGATG TGGTAAAGGA AATCTCGAAT ACATCGAGCA GAAACTCCGA TCTGGTGGCC
AGATACAGTG GAGAACAGCT TGCCATCTTG TTGCCCAATA CAGAAGAGCC CGCTATTTTG
GCCGATAAAT GTCTCTCGAA TGTAGAAAAA CTGTATATCC CCCATGAAGA CTCGCCGGTT
TCCGAATATG TCACCATTAG TCTCGGGGTT ATGACTATCA TTCCGACTCA AAGGTGTGAC
CCCGATGATT TTATCTCAAA GACAATAGCC GCTCTTATGG AGGCAAAGGA GTCCGGTAGA
AATAGAGTAT TTGTTGGTGA TAAGGCCATC CAGGCTAATC AAGGCGAGAT TATCGATTTC
AAATCCCCCA AGGGTCATTC TCCGGAATAA
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| Protein sequence | MPISNSYTRY IILFSVSIGI LLSGLIGYSF YQKETQAIEA DFRSDVDDKA SALERELLLK
SEVLYALKGL FDSSENVTAQ EFNRLASGFL IRHQDIQALE WIPKVIQDHR DAYEQAGRRM
HPDFEFTERE SQGRMVRASE RAVYFPVYYA EPLKGNEVAL GFDLASDEKR LKIINKSRDL
DLSLATESIR LVQETSDQRG VLVFMPIYDG EPTTLKKRRE KFLGFVLGVY RIGEIFEAAV
RHTSVQGLNL SLIDNTGIEA AQLYANFSTD QAQGMASVEF NYSKPLRRFG GRQWTLVATP
SLGYVVERRS LLPLMSGSFC ILFVLLVGAY LYAVMKHSVL IEAEVFERTQ ALHKAKQALK
DTALIDGLTK VANRRQFDAQ YETEWLRAIR DGSSLSLIMI EVDHFKLYKA HYGDSAGDQC
LKDVVKEISN TSSRNSDLVA RYSGEQLAIL LPNTEEPAIL ADKCLSNVEK LYIPHEDSPV
SEYVTISLGV MTIIPTQRCD PDDFISKTIA ALMEAKESGR NRVFVGDKAI QANQGEIIDF
KSPKGHSPE
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