| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3783 |
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| Symbol | |
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| ID | 5612559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4610864 |
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| End bp | 4612504 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934737 |
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| Product | sensory transduction system, regulatory protein |
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| Protein accession | YP_001475515 |
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| Protein GI | 157376915 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTT TTTCAAAGTA CATTCTCTTA ACCGCTATCT TGATAGGCTT AAGCCTTTCG
GGCTATATGG GAAAAAGTTT CTATGAAGAA GAGACTAAGG CAATTGAGCA GGACTTTCAC
AAGGACGTCG ATGATAAAGC GGCAGCCTTA GAGAGGGAGT TACTGCTCAA TATTGAGGTG
CTTTTTGCCA TTAAAGGGCT CTTTGATAGC TCAGATGAGG TAAGTTCAGC CGAATTTAAC
CGAATTGCCC AAAGCTTTCT TGCCAGACAT CAGGATATTC AGGCCTTGGA GTGGGCGCCA
AAAGTGCTCG AGAATCAAAG GCTGGCCTAT GTGGATTCGA GACGCGCCGA GTTTCCCGAT
TTTGAAATTA CCGAGGTTGG TCCCCAAGGC ATGATCCGCG CCCTCGACAG GGACAGCTAC
TTCCCCGTCT CCTACGTTGC GCCAATCGCC GGTAACGAGG TGGTCCTGGG ATTCGATCTC
TCCTCCAGCG ATAAAAGAGT CGAGACTTTG GAGAAGGCGC GAGATCTGGA TCAGTCGGTA
GCGTCGCCCG GCATAAGCCT GCTTCAATAT CACTCGAATC AAAAAGGGAT CCGCATCTTT
GTACCCATAT ACACGGGGGA GCCCACTACG GTATTTAAAC GTCGTGACCA GCTTCGTGGA
TATGTGCTGG GTGTTTATCG TATCGGTGAC ATGTTTGATA GTGCGATCAA GCGAACCTTG
GCTCATGGAA TCTACTTCTC CCTGGAGGAT AGGACATCAA ATAGCGACAG CAGCCTCTAT
TCAAACTTTC CAGCGGCGCT CTCCCTGAAT TCATCGCAGC AAACCTTCGC CTATGAAAAG
TCGCTGACTC GGTTTAGTGG TAGACAGTGG ACGATTGTTG CCGTTCCCAG TACGGGCTAT
GTCGTTGAGC GAAGAGGTAA ATTGCCCTAT ATGATAGCGA TATTCGGAGG ACTCTTTGTC
TTGCTGGGGG CATCCTATAT CTATGCGATT TTAAGGCGTT CGGAGCTGAT TGAAAGTGAG
GTCGAGCAGA GAACCCATGA TCTCAATGAA GCCAAACGTA AGCTGGAAGA GCTTTCTCAA
ACCGATGGAT TAACTAAAAT TCCTAACAGA CGCTGCTTCG ATGAGACCCT GCAAGCATTG
TGGCAAAAAG CGATAAGAGA GGAGTCAAAA ATTGGCTTGA TGATGATAGA TATCGACCAT
TTTAAACTTT ACAACGATAC CTATGGCCAT CTCGCCGGCG ATCAATGCTT ACGTGAAGTC
GCCCAGGCAT TAAGTCAGAC GCTGAATCTG AATACCGATC TTGTGGCCCG TTATGGGGGT
GAAGAGTTTG TCGTGTTACT GCCTGATACC CGAGACTGCC TCTCTCCTGC AAAACGTTGC
CAATATAATA TCGAACGTCT GGGTCTTCCC CATAACAGCT CACTGACCAG TGAGTTTATT
ACCGTCAGTA TTGGCGTTGC CAGTATCTCA CCGACTCAAG ATTCGGATCT TGTAGATCTG
ACGACTCAGG CAGATCTGGC CTTGTATGAA GCTAAGAATT CCGGTCGAAA TCGTGTCTGT
TTCTTTAAAC CTAAGCCGGT AGATATTTCC ACTATCAGCC ATAAAGAAAA TCATAAAACC
TGTGCTGTTT CGCATCAATG A
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| Protein sequence | MNFFSKYILL TAILIGLSLS GYMGKSFYEE ETKAIEQDFH KDVDDKAAAL ERELLLNIEV
LFAIKGLFDS SDEVSSAEFN RIAQSFLARH QDIQALEWAP KVLENQRLAY VDSRRAEFPD
FEITEVGPQG MIRALDRDSY FPVSYVAPIA GNEVVLGFDL SSSDKRVETL EKARDLDQSV
ASPGISLLQY HSNQKGIRIF VPIYTGEPTT VFKRRDQLRG YVLGVYRIGD MFDSAIKRTL
AHGIYFSLED RTSNSDSSLY SNFPAALSLN SSQQTFAYEK SLTRFSGRQW TIVAVPSTGY
VVERRGKLPY MIAIFGGLFV LLGASYIYAI LRRSELIESE VEQRTHDLNE AKRKLEELSQ
TDGLTKIPNR RCFDETLQAL WQKAIREESK IGLMMIDIDH FKLYNDTYGH LAGDQCLREV
AQALSQTLNL NTDLVARYGG EEFVVLLPDT RDCLSPAKRC QYNIERLGLP HNSSLTSEFI
TVSIGVASIS PTQDSDLVDL TTQADLALYE AKNSGRNRVC FFKPKPVDIS TISHKENHKT
CAVSHQ
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