| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3776 |
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| Symbol | |
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| ID | 5610703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4600869 |
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| End bp | 4602152 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934730 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475508 |
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| Protein GI | 157376908 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACAA GTATCATCTT GATCTCTTTT ATCACGCTAA AAGAGATACA GATGCAGACC
AACTCGCAGT TGTATCAGGT CAGCGATATC GAGCATAAAA TTGATCTGTT GAGCAGCAAA
CTATGGTTAT TGCAGCAGTA TCATGACGAG GATGCTCTGG TGCAGACTCG CGACGCACAT
GAAGAGCTTA AGCTGCTATT GAATAAGAAG CTGTTCACTC ACAAAAATAA AATCATCATA
GTCGCCAACC TGATTAGAAT GAACGCTAAC TTAGGTACCC TACTCGAACT GTCTCAAAAA
GATCTCGAAT CTCAGTTTCG CCACGGTATT ACCTCGCCTG CCGGCATGCT TTCGGCGCGA
TATAGCATGA CACTGCAGTC GATGAATGAA GACCTGGGGA AGTTGGAACG ATTAGCAATC
AAGGATTCAG AGATATCACA GCGAAAAATA CTATTTGCAG TGATATTACT GATGGTAGTC
GGCTCGGCGG TGGTCATGGC TTTAACTCTG TTTACCTTAA AGACCTTTAA TACCAACCTC
AACGCACTAA CCGTAGGAAT AAAAGATCTG GCTAAAGGCA ACCTCAATAG TCGAATAGAG
ATACATGATA CGGATGAACT ATCTATTCTG GCTGAGCAAT TTAACTTAAT GAAACGCTCT
CTGGAGGAGA CGACGATTAA GAAAGATCAG CTGCAACTCG AGGTCGATCG TCAAACGAAA
GAGCTGCAGC AGCAGCGTGA AGAGTTTCAG CACCAGGCCA ATCATGACAG CCTGACGAAA
CTGTACAGCC GGAGCGCATT TGAGGAGCAG ATGAAAACGG CGATTGCTCG CTGCGGTCGT
ACTAAACAGA GTGCCGCGCT GCTTTTCATC GACCTGGATC GATTTAAAGC CATTAATGAT
TGTCATGGTC ATGCGGCGGG TGATGCGGTC TTGATCCAGA TCGCTCAAAA GCTGTTACAG
ACGGTGCGTT CATCGGATAT TATTGCCAGA ATCGGGGGAG ATGAATTTAT TATCTGGTTA
GAACCCATCG AAAATGCCAC ACAGGTGATA ACCGTGATCA ACAAATTGAT CGAAGAGTTC
GCGTTACCTA TGCAATATCA GGATGTTGAA CTTTTGATCG ATGCGAGTAT TGGGGTGGGT
TTCTTCCCTA TAGACGCCAC AGAGCTGAGT GGCTTATTAA AAGTTGCCGA TGACAATATG
TATAAAGCTA AGGAGATTGA TGGCACTACT TTCCAGCTGA CCAACAAGGC AACGGTGGGA
TTCTCCGACG CCAAGATGGC TTAG
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| Protein sequence | MLTSIILISF ITLKEIQMQT NSQLYQVSDI EHKIDLLSSK LWLLQQYHDE DALVQTRDAH
EELKLLLNKK LFTHKNKIII VANLIRMNAN LGTLLELSQK DLESQFRHGI TSPAGMLSAR
YSMTLQSMNE DLGKLERLAI KDSEISQRKI LFAVILLMVV GSAVVMALTL FTLKTFNTNL
NALTVGIKDL AKGNLNSRIE IHDTDELSIL AEQFNLMKRS LEETTIKKDQ LQLEVDRQTK
ELQQQREEFQ HQANHDSLTK LYSRSAFEEQ MKTAIARCGR TKQSAALLFI DLDRFKAIND
CHGHAAGDAV LIQIAQKLLQ TVRSSDIIAR IGGDEFIIWL EPIENATQVI TVINKLIEEF
ALPMQYQDVE LLIDASIGVG FFPIDATELS GLLKVADDNM YKAKEIDGTT FQLTNKATVG
FSDAKMA
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