| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3772 |
|---|
| Symbol | |
|---|
| ID | 5610122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4595762 |
|---|
| End bp | 4597243 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934726 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475504 |
|---|
| Protein GI | 157376904 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0397] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA TGGAAATAGA CCTGGGTTTA ACATTCGACA ACAGTTATGC ACAAGAACTG
GAAGGTTTTT ATGATGCTTG CCTGGGGGAC AGGGCGCCGA GCCCCGAATT AGTGAAATTA
AATGCATCCC TGGCAGAGAG TGTTGGCCTG ACCAATACCG ACACCGGGGA ATTAGCCCAA
GTGTTTTCGG GGAGTGACGC ACCTATCGGC GCATCACCAT TGGCACAGGT CTATGCGGGA
CACCAGTTTG GTGGATTTAC TCCTCAATTG GGGGATGGCC GTGCGCTCTT GCTGGGGGAG
GTACTGGATA AAGAGGGCAA GCGACTGGAT CTGCAGCTTA AAGGTTCGGG CCCGACAAAG
TTTTCACGCC GTGGTGACGG CAAGGCAGTA CTGGGCGCCG TACTGCGCGA GTATATCTTG
AGTGAGGCCA TGCATGCCCT CAATATTCCC ACCACCAGAG CATTAGCCGT TGTCACTACC
GGTGAGCCTG TAATGCGAAC CCAGTTTCTA CCCGGCGCCG TGCTTACCCG CATCGCATCG
AGTCATCTGC GTGTCGGTAC ATTTCAATTT TTCTCCGCAC GTGGTGAGCA AGACAAGGTT
AAGCAACTTG CCGATTACGC GATAGCACGT CACTACCCTG AGCTAAAAGA GAGTCAGCAG
CCTTATCTGG ATCTCCTCTG TGCGGTTCGG GATAAACAGG CTGAGTTAGT TGCCAGGTGG
TTACTCGTCG GTTTCGTACA TGGTGTGATG AATACGGATA ATATGACCAT CAGCGGTGAA
ACCATAGATT ATGGTCCCTG TGCCTTTATG GATAACTATG ATACCAATGC CGTATTTAGT
TCCATCGATG AACAGGGTCG CTACTCCTAT AACAATCAAC CCGTTATAGC GCAGTGGAAC
CTGGCTAGGT TAGCGGAAAC CTTATTGCCA TTGATAGATG TTGATAGAGA CGAGGCGATA
GCCCAAGCTA CCGAAGCGGT GACAGGATTC TGGGAAACCT TCCATAGATG TTGGCTGGCA
GGCATGCGAG CCAAGTTAGG CTTATCGACC GCGCAGGAGA CCGATTTGGC ACTGTGCGAG
CAGTTACTCG AGACCATGTC GGGACAGGAG GTGGATTTTA CCCAACTATT TCGTCAACTC
GCCAGCGATC TGACCAGTGG CAATAGTGAA AGCCAAACCC TATTCAAAGA TGCCGATAAG
TTTCTCCTGT GGCGAGCGTC CTGGTTAGCG CGCCTGGCCC AAGAGAGCCT GTCGACACCC
GAGCGCGTAG AGATGATGAA TGGGGCTAAT CCGCTCTATA TTCCCAGAAA TCATCTGGTT
GAAGATGCCA TCGATGCCGC CGAGCAAGAG GGGGATTATC AGCCGTTTGA GAAGCTGATT
GCCGTGCTCG CGACCCCTTA CATGCAACAG GAGAGCGCCG ACGATTACAC TAAGCCTGCG
CCCGAGAGCT TTGGGTGTTA TACGACTTAT TGCGGTACTT AG
|
|---|
| Protein sequence | MSSMEIDLGL TFDNSYAQEL EGFYDACLGD RAPSPELVKL NASLAESVGL TNTDTGELAQ
VFSGSDAPIG ASPLAQVYAG HQFGGFTPQL GDGRALLLGE VLDKEGKRLD LQLKGSGPTK
FSRRGDGKAV LGAVLREYIL SEAMHALNIP TTRALAVVTT GEPVMRTQFL PGAVLTRIAS
SHLRVGTFQF FSARGEQDKV KQLADYAIAR HYPELKESQQ PYLDLLCAVR DKQAELVARW
LLVGFVHGVM NTDNMTISGE TIDYGPCAFM DNYDTNAVFS SIDEQGRYSY NNQPVIAQWN
LARLAETLLP LIDVDRDEAI AQATEAVTGF WETFHRCWLA GMRAKLGLST AQETDLALCE
QLLETMSGQE VDFTQLFRQL ASDLTSGNSE SQTLFKDADK FLLWRASWLA RLAQESLSTP
ERVEMMNGAN PLYIPRNHLV EDAIDAAEQE GDYQPFEKLI AVLATPYMQQ ESADDYTKPA
PESFGCYTTY CGT
|
|---|
| |