| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3761 |
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| Symbol | |
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| ID | 5612660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4583997 |
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| End bp | 4584677 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934715 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001475493 |
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| Protein GI | 157376893 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000810372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTGATG CAATTAACGC TTCACTGTTT ACCCCTATCG GGGAAGATGG CTTAATCGGT
ATCTACCTCA TCATAAATGG CCTTAAAGTC ACGCTTATAG TGACCTTCTT TGCCATGATA
ATGGGTTCAA TATTGGGGGT GACGACCACC CTGATGAAGA TGTCATCTAA GTGGTACCTG
CGTTGGCCGG CTAATTTTTA TGTTGGGATT ATTCGTGGTA CGCCGGTAGT TGTGCAGTTA
GTGATCCTTT ACTTTATTGT GCTGGCCGCG TTCGATATCG ACAAGATCAC CGCCGCCATC
ATCGCCTTCG GCCTCAATAG CGGTGCCTAT ATCTCTGAGA TCATTCGCGC CGGGATCCAG
GCGGTCGATA AGGGCCAGAT GGAGGCCGCA CGTTCCTTGG GACTATCCCA TGGGGCAACC
ATGAAAGAGG TGATACTTCC TCAAGCGATT AAGAATATTC TCCCCTCTCT GGGTAACGAA
TTTATCGTGT TACTGAAGGA GACGGCTGTG ATCGGCTTTA TCGGTGGCGT CGATCTGATG
CGCGCCGGTG AGATCATTCG TAGCCGTACC TTCGAAGACA GTGTGCCGCT ATTTACCTGT
GCGCTGATCT ATCTGCTGCT GACATATAGC TTCACCCTAC TACTGTCTAA ATTTGAAACG
AGGTTAAAGC AAAGTGATTA A
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| Protein sequence | MIDAINASLF TPIGEDGLIG IYLIINGLKV TLIVTFFAMI MGSILGVTTT LMKMSSKWYL
RWPANFYVGI IRGTPVVVQL VILYFIVLAA FDIDKITAAI IAFGLNSGAY ISEIIRAGIQ
AVDKGQMEAA RSLGLSHGAT MKEVILPQAI KNILPSLGNE FIVLLKETAV IGFIGGVDLM
RAGEIIRSRT FEDSVPLFTC ALIYLLLTYS FTLLLSKFET RLKQSD
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