Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3756 |
Symbol | |
ID | 5609825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4576624 |
End bp | 4577790 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934710 |
Product | peptidase M19, renal dipeptidase |
Protein accession | YP_001475488 |
Protein GI | 157376888 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2355] Zn-dependent dipeptidase, microsomal dipeptidase homolog |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAACA ATGCTTGCAA TCCAACCCGT CGAAGAATAC TTAAAGGGTT AGCGGCCGCC TCATTATTAA GCCCGCTGGG GATTTCGCCT GCATTTGCCG CGGCCAAAAA ACGCCTTTAT ATCGATGGCC TCTCCTTTCT TCCTGAAAAT CTAGCCGATA TCCGTGCCTC CAAACTCGAT GCCTACCTTT GCGATATTTC AGCCATTGAA ACCATAGAAC AAGCCGACGG CACCATGAAT TACAAGCGTA CCTATGACGC CTGTATGAAA AGCATTAAAG AAGCGAACCA AATCGTTAGC GCCAACCCCA ACATATTAAT GCCGGGGCTG ACAGGCCAGG ACATCGCACT GGCAGTCGAG CAAGAGCGCA CTGCCGTCTA TTTTCAGATC CAAGGCGCCG ATTGTGTTGA AGCCGATAGC GATGCCAACT CATGGCAACA TCTCGATCAA TTTCACCAGC AAGGTTTACG GGTATTACAA CTGACGCACC ACTACGGCAA TCGCTTTGCC GGCGGCGCAT TAGATAATGA CGGTCAACAG GGTTTAAATA AGCCGTTAAC TGCAGATGGC CGCCAATTGA TCGCCGCACT TAACCAGCGC AACATGCTCA TCGATGTCAG CCATTCGAGC CCCCAGACGG CGCTGGACAC CGTAAAAGCC AGTAACAGTC CGATAGTACA CAGCCACGGC GCCGTTCGCT CTATCGTCAA CAATGCCCGT TGCTCACCCG ATGAAGTCAT CCGTGCTATC GGTGACAGCG GTGGCGTATT CGGGGTGTTT ATGATGAGTT TTTGGTTGAC CAATAAACCC CTACCGACCA TTAAAGATTA TGTAAAGCAA CTCGATCGCG TCGTCCGTAT CGGCGGCATA GATTGTGTCG CCATCGCCAA CGACTTCCCA CTGCGTGGCC AAGAGAACTT ACTGGCGCTG GGCAATGATA ATGCCGAAGG CATCAAAGAG TACTTACCTT GGTGGCACAG TTTAGCCGCT AAAAATGTGT TGGGATTTGA ACACGAACCC ACACATGTCG TGATCCCCGA ACTCAACGAT ATTGATCGCA TGAGCCGCAT CGACGATGCA CTAGCCAAAG CGCGCTACAA ATCCACCGAC AGAGACCGCA TGCTCGGTGG TAACTGGCAA CGCGTGCTTA AAAACGTATT GGGTTAA
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Protein sequence | MTNNACNPTR RRILKGLAAA SLLSPLGISP AFAAAKKRLY IDGLSFLPEN LADIRASKLD AYLCDISAIE TIEQADGTMN YKRTYDACMK SIKEANQIVS ANPNILMPGL TGQDIALAVE QERTAVYFQI QGADCVEADS DANSWQHLDQ FHQQGLRVLQ LTHHYGNRFA GGALDNDGQQ GLNKPLTADG RQLIAALNQR NMLIDVSHSS PQTALDTVKA SNSPIVHSHG AVRSIVNNAR CSPDEVIRAI GDSGGVFGVF MMSFWLTNKP LPTIKDYVKQ LDRVVRIGGI DCVAIANDFP LRGQENLLAL GNDNAEGIKE YLPWWHSLAA KNVLGFEHEP THVVIPELND IDRMSRIDDA LAKARYKSTD RDRMLGGNWQ RVLKNVLG
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