| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3749 |
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| Symbol | |
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| ID | 5612234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4567794 |
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| End bp | 4569512 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640934703 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475481 |
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| Protein GI | 157376881 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3591] V8-like Glu-specific endopeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGG ACCTAGCTGA ATCAGAGTCT ATATTAGTGG CTGCAATTGC CAGTAACAAC
TATGGAGAAG TCGAAACTCT ATGTTGGACA TTGATAGATT ATGTAAAAAC TCATAGTGAA
CCGTATGACA TTAATAGTGC TTTGAAGATT GTAAGCTTGT TGCAGAGAAA AAATTATTTT
GAGCTATCTA GTTTTGTGTC TAATTCACTA ATTATTTCTG GTGTTGATTC ATTTAAGCTA
AAAAAACACT ATGCACAAGC TTTGATCAAT CAAGGGCAGC TTTCAGCTTC ATTGGCATAT
TTATTTGAAC TTCAACATAA GTTGCAAAAT ATAATAAAAG TACCTAAAAA ACAATCATCA
TTGATAGATG AGCAATTTGA AATTAGAGAA GATTTTACAG AAGTCAGAGG GCTTATAGGA
CGAGTATATA AACAAATATA TGTAGAGCTA AAAAGTGAAT CATTACAAAG TGTAGAGGCA
TTAACTAAGG CACTAATGGC TTATCAAGAG CCTTATGTTG AAAATCCTGA ATTTAATTAT
TGGCATGGAA TTAATTATGT GGCTTTGTTA AAAAGAGCTG CTGCTGACCA TATAAATTTT
GAGGGTGTTG TTGATGCTGA TAAAGAAGCA GAATCTATTG CTTTAAACAT TCTTTCTTCT
ATGTGTTTGA AATGGAGTAA GGGTGAAGCA ACAATGTGGG ACAGTGCTAC AGCATTGGAA
GCATGTGTAG CACTTTCTAA CTATGAAGAA GCTGCTAAGT GGTTAGAGCG ATATTTAAGC
GAACCTTTTG CTGATGCATT TGAATTAGGG AGTACGTTAA GGCAGTTTGA AGAAGTGTGG
CAATTAAAGA TTACTGAAGA ACCTGGGGCT ACTCTTTTAC CTTTACTTCA TGCTGAGTTA
TTGTTGCGAG AAGGTGGTGG ATTTAATGTT AGCCCAGATA ATTTAAATAG TTTAAATGTT
GAGCAAGAAA CAGATCTTCG ACATGAGAAA GTATTTGGGA CTGCGAGATA TCATAGTTAT
AGCTTCCTGA AAAAAGCTGT TCAGCGTGCT CATAGTGTTG CGAGAATTGA GTTTGAACCA
GGTAAAGGAA TTGGAACTGG TTTTGTGGTA AAGGGGAAGG AATTGCATGC TTCTTTTGGT
GATAAAACTG TTTTATTAAC TAATTCACAT GTAATTTCTA ATAATATTAA TTGCCGAAGT
TCTATAGTTC CTGAGGATGC CATCGTCACT TTCGAATTAG ATGACCATAA AGAGTACTCC
CTAAAAAAGA TACTTTGGAG TTCACCAATA GAGCATTTGG ATGCTTCGAT CATAGAGTTT
GATGGTGATG CACCTGAGAT AGTTTATGAC TTCCCTATTC ATTCTAGGCT TCCTTTAACT
GATGGGAAAC AGCGTGTCTA TATAATTGGA CATCCGTTGG GTGGTGGGAT CTCATTTTCA
ATGCAAGACA ATATATTATT AGATCATGAA GCCCCCCATA TACATTATCG AGCACCAACA
GAAGGTGGTA GCTCTGGAAG CCCCGTATTT AATGAACAGT GGAAGTTAAT AGGGATTCAT
CATGCTGGTG GAGAGAAATT ACAACGGCTC AATAATAAAA AAGGATTTTA TCAAGCTAAT
GAAGGGATCT GGATTCAAAC AATAATTAAT AAATTAAATT CAGATTTTAA TTGTTTAGCG
ATCGCTACTT CTGGTGTTGG TAAAATATTA AAGTCATGA
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| Protein sequence | MEWDLAESES ILVAAIASNN YGEVETLCWT LIDYVKTHSE PYDINSALKI VSLLQRKNYF
ELSSFVSNSL IISGVDSFKL KKHYAQALIN QGQLSASLAY LFELQHKLQN IIKVPKKQSS
LIDEQFEIRE DFTEVRGLIG RVYKQIYVEL KSESLQSVEA LTKALMAYQE PYVENPEFNY
WHGINYVALL KRAAADHINF EGVVDADKEA ESIALNILSS MCLKWSKGEA TMWDSATALE
ACVALSNYEE AAKWLERYLS EPFADAFELG STLRQFEEVW QLKITEEPGA TLLPLLHAEL
LLREGGGFNV SPDNLNSLNV EQETDLRHEK VFGTARYHSY SFLKKAVQRA HSVARIEFEP
GKGIGTGFVV KGKELHASFG DKTVLLTNSH VISNNINCRS SIVPEDAIVT FELDDHKEYS
LKKILWSSPI EHLDASIIEF DGDAPEIVYD FPIHSRLPLT DGKQRVYIIG HPLGGGISFS
MQDNILLDHE APHIHYRAPT EGGSSGSPVF NEQWKLIGIH HAGGEKLQRL NNKKGFYQAN
EGIWIQTIIN KLNSDFNCLA IATSGVGKIL KS
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