Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3739 |
Symbol | metH |
ID | 5611227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4550071 |
End bp | 4553829 |
Gene Length | 3759 bp |
Protein Length | 1252 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640934693 |
Product | B12-dependent methionine synthase |
Protein accession | YP_001475471 |
Protein GI | 157376871 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACTG GCACCCTAAG TAACTCAAAA AAAATAAGAG ATATTGGCCC ACAGATCAGC CAACAGCTAA AAGACAGTAT CCTGATCCTC GACGGCGCCA TGGGCACCAT GATCCAGGAC CGCAAGTTTG AAGAGGCCGA CTTTCGTGGC GAGCGCTTCA ACGAGTGGCC CTGCGACGTC AAAGGCAACA ACGACCTGTT AGTGCTCACT CAGAGCGCCG CCATCAAGCA GATCCACAAA GATTACCTGC TCGCCGGTGC CGACATTATC GAAACCAACA CCTTCAACGC GACCCGCATC GCTATGGCCG ATTACGACAT GCAGGAGCTC TCGGCAGAGA TCAATCTGAA TGGCGCCCGC CTTGCCCGCG AAGCGGCCGA TGAGGTTGAA GCCGAGACAG GCCGTGCCTG CTATGTGGCC GGCGTATTAG GCCCGACCAA CCGCACCTGC TCCATCAGCC CCGATGTAAA TGACCCCGGC TTTCGTAATG TCAGCTTCGA CGAGCTGGTC GAGGCCTATA TCGAGTCTAT CGATGCGCTT ATCGAAGGTG GCTCGGATAT CATCATGGTG GAAACCATCT TCGATACCCT GAACGCCAAG GCCGCACTGT TTGCCATCGA AACCGTGTTC GAGAACTTAG GTACGCGCCT GCCTATCATG ATCTCAGGCA CCATCACAGA TGCGTCGGGT CGCACCCTGA CAGGCCAGAC AACCGAGGCC TTCTACAACT CGCTGCGCCA TGTAAAGCCG CTGTCTATCG GCCTTAACTG TGCACTGGGC CCGAAAGAGC TGCGTGCCTA CGTCGAAGAG CTATCGAAAA TATCCGAGTG TTATGTCTCG GCGCACCCCA ATGCGGGCCT GCCGAACGAG TTTGGTGGCT ACGACGAGAC GCCCGCCGAG ATGGCCGAAG TCATAGGCCA GTGGGCCGAA GAGGGATTTT TAAATATCGT CGGCGGCTGC TGCGGCACCA CGCCCGACCA TATCCGCGCG ATCCGCGAAG CCGTCATCAA ACACCCGGCG CGCGCCCTGC CCGACATCCC GGTGGCCTGC CGTCTGTCAG GCCTCGAGCC GCTCACCATA GATGCCAACT CGCTGTTTCT GAACGTGGGT GAACGCACCA ACGTCACCGG CTCGGCCAAG TTTCTGCGGC TGATCAAGAC CGGCGAATAT GAGGAGGCGC TCTCTGTCGC CCGTGATCAG GTGGAGAACG GCGCACAGAT CATCGATATC AACATGGATG AAGGCATGCT CGACGGCGTC GAGATGATGC ACAAATTTCT CAACCTTATC GCCTCCGAGC CCGACATCTC ACGTGTGCCT ATCATGATCG ACTCCTCGAA GTGGGAGGTG ATCGAAGCGG GCCTCAAGTG TATTCAGGGT AAAGGCATCG TCAACTCCAT CTCCCTTAAA GAGGGTGAGG AGAAGTTTAT TCAGCAGGCC AAGCTGGTTA AACGCTACGG CGCCGCGGCG ATTATCATGG CGTTCGATGA AGAGGGACAG GCCGACACCA AGGCACGTAA AATTGAGATC TGTACCCGTG CCTATCGTGT GCTGGTAGAT AAAGTGGGCT TCCCGCCGGA AGACATCATC TTCGATCCCA ACATCTTCGC CATCGCCACG GGTATCGACG AGCACGACAA CTATGCGGTC GACTTTATCG AGGCCACCCG TGAAATTAAA CGCACCCTGC CCCACGCCAT GATCTCCGGC GGAGTATCAA ACGTCTCCTT CTCGTTCCGC GGTAACAACC CCGTACGAGA GGCGATTCAC GCCGTCTTCC TCTATCACGC CATTCAGGCG GGCATGGACA TGGGTATCGT CAACGCGGGT CAGCTGGCCA TCTATGACGA TATCGATGCA GAGTTAAAAG AGAGAGTAGA GGCGATTGTC CAAAACTTGC CCTGCACCGC TCTTGGTTCA GATGGCAGCG AAACCAACAA CACCGAGCTT TTATTAGAGG TCGCAGAGAG GTTCCGCGGG GATGGCAGTC AAACCGCCAA GAAGGAAGAT CTGGAGTGGC GCAGCTGGGA TGTCAATAAA CGTCTTGCCC ATGCACTGGT TAAAGGGATC ACCGACTTTA TCGATGAAGA CACCGAAGAG GCGCGAGCCA ATGCCTCCCG TCCGCTGGAT GTCATCGAAG GGCCTCTGAT GGACGGTATG AATATCGTCG GCGACCTGTT CGGCTCGGGT AAGATGTTCT TGCCTCAGGT GGTGAAATCG GCTCGGGTGA TGAAGAAGGC CGTGGCCTAC CTTAACCCCT ATATCGAAAA AGAGAAGGTA CCGGGTCAGT CAAACGGCAA GATCTTGATG GTGACGGTAA AGGGCGACGT ACACGATATC GGTAAGAACA TCGTCGGCGT GGTGCTGGCC TGTAACGGCT ATGAGGTGAT AGACCTTGGC GTGATGGTGC CGGTGGAGAA GATCATCGAA GTGGCCAAGG CGGAGAATGT CGACATCATA GGTATGTCCG GCCTTATCAC TCCGAGCCTC GATGAGATGG TGCATAACGT AAAATCGTTC CATAAGGCAG GGCTCACCAT ACCCTCGATT ATCGGCGGTG CTACCTGCTC GAAAATTCAT ACCGCGGTCA AGATTGCCCC CCACTCCCCC GAGGGCGCCA TCTATATCGC CGACGCCTCC CGCGCCGTAC CTATGGTATC TAAACTCATC AATAACGAGA CTCGCCAGGC GACCATAGAT GAGGCCTATC AAGAATATGA CATCATGCGC GAAAAGCGTC TGTCACAGGC GAAACGCAAA GAGATCACCA CCATTGCGGC GGCCCGTGAT AACCGCTGCC AACACGACTG GGAAAACTAC ACTCCATTTG TCCCTAACCA GCTTGGTCGT CAGGTGTTCG ATGACTACCC GCTCGAAGAC TTAGTCGATC GCATCGACTG GACGCCGTTT TTCCGCAGCT GGGAGCTTCA TGGACATTTT CCACGTATTT TAGATGACGA AGTGGTCGGC GCAGAGGCAC GTAAGCTGTT CCATGATGGC AAGGCCATGC TTGAGAAGAT CATCGATGAG AAGTGGCTCA CCGCCAAGGC CGTCATCGGC CTGTTCCCGG CCAACACGGT GAACCATGAC GATATCGAAC TCTACTCTTG TGATGGGACG GACGAAACCC GCGAGAAACC AATAATGACC ACCCATCACC TGCGTATGCA GATAGAGCGT GTGGGTAACG ACAACTTCTG TCTCGCCGAC TTTGTCGCGC CGAAAGACTC TGGCGTTGCC GATTACATGG GCGGCTTTGC AGTCACCGCA GGTCATGGCA TCGACGAGCA TATCGAGCGC TTCGAAGCCG ATCACGATGA CTACAATGCC ATCATGCTCA AGAGTCTCGC CGACCGTCTG GCCGAAGCCT TCGCCGAGCG TATGCACGAA CGGGTACGTA AGGAGTTCTG GGGCTACGCC AGTGATGAGG CGCTCGATAA TGAAGCGCTG ATCCGCGAGA AGTACAAGGG CATTCGTCCT GCACCGGGGT ATCCGGCCTG CCCCGATCAC ACCGAGAAGG GTCTGCTTTG GGACCTGCTT AAGCCCGATG AGACGATCGA TCTTAACATC ACCGAAAGCT ACGCCATGTT CCCGACGGCG GCAGTATCAG GCTGGTACTT CGCCCATCCT AAGTCGCGTT ACTTTGGCGT GACCAATATT GGCCGGGATC AGGTAGAGGA TTATGCGGCG CGTAAGGGGA TGAGTGTGGC AGAAACAGAG CGGTGGTTGG CACCAGTGTT GGATTATGAT CCTGAGTGA
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Protein sequence | MATGTLSNSK KIRDIGPQIS QQLKDSILIL DGAMGTMIQD RKFEEADFRG ERFNEWPCDV KGNNDLLVLT QSAAIKQIHK DYLLAGADII ETNTFNATRI AMADYDMQEL SAEINLNGAR LAREAADEVE AETGRACYVA GVLGPTNRTC SISPDVNDPG FRNVSFDELV EAYIESIDAL IEGGSDIIMV ETIFDTLNAK AALFAIETVF ENLGTRLPIM ISGTITDASG RTLTGQTTEA FYNSLRHVKP LSIGLNCALG PKELRAYVEE LSKISECYVS AHPNAGLPNE FGGYDETPAE MAEVIGQWAE EGFLNIVGGC CGTTPDHIRA IREAVIKHPA RALPDIPVAC RLSGLEPLTI DANSLFLNVG ERTNVTGSAK FLRLIKTGEY EEALSVARDQ VENGAQIIDI NMDEGMLDGV EMMHKFLNLI ASEPDISRVP IMIDSSKWEV IEAGLKCIQG KGIVNSISLK EGEEKFIQQA KLVKRYGAAA IIMAFDEEGQ ADTKARKIEI CTRAYRVLVD KVGFPPEDII FDPNIFAIAT GIDEHDNYAV DFIEATREIK RTLPHAMISG GVSNVSFSFR GNNPVREAIH AVFLYHAIQA GMDMGIVNAG QLAIYDDIDA ELKERVEAIV QNLPCTALGS DGSETNNTEL LLEVAERFRG DGSQTAKKED LEWRSWDVNK RLAHALVKGI TDFIDEDTEE ARANASRPLD VIEGPLMDGM NIVGDLFGSG KMFLPQVVKS ARVMKKAVAY LNPYIEKEKV PGQSNGKILM VTVKGDVHDI GKNIVGVVLA CNGYEVIDLG VMVPVEKIIE VAKAENVDII GMSGLITPSL DEMVHNVKSF HKAGLTIPSI IGGATCSKIH TAVKIAPHSP EGAIYIADAS RAVPMVSKLI NNETRQATID EAYQEYDIMR EKRLSQAKRK EITTIAAARD NRCQHDWENY TPFVPNQLGR QVFDDYPLED LVDRIDWTPF FRSWELHGHF PRILDDEVVG AEARKLFHDG KAMLEKIIDE KWLTAKAVIG LFPANTVNHD DIELYSCDGT DETREKPIMT THHLRMQIER VGNDNFCLAD FVAPKDSGVA DYMGGFAVTA GHGIDEHIER FEADHDDYNA IMLKSLADRL AEAFAERMHE RVRKEFWGYA SDEALDNEAL IREKYKGIRP APGYPACPDH TEKGLLWDLL KPDETIDLNI TESYAMFPTA AVSGWYFAHP KSRYFGVTNI GRDQVEDYAA RKGMSVAETE RWLAPVLDYD PE
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