| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3734 |
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| Symbol | cobT |
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| ID | 5614185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4541429 |
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| End bp | 4542457 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934688 |
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| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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| Protein accession | YP_001475466 |
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| Protein GI | 157376866 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA TCAGTCCGGC AAATCATGAG TTTGATGATG AGATTCAAAG TAAAATCGAC
AATAAAACCA AACCCTTGGG AGCGCTCGGA GAATTAGAAA ATTTAGCTAA ACAGTTGGCT
CTGGTATTAG GAAAAGATAA GCCTGAGATC ATTAACCCTA AGCTATTGGT TTTTGCGGCG
GATCATGGAA TCGCCTCATC CGGTGTTTCA ATTGCTCCAA GTGAAGTGAC TACACAGATG
GTGATGAACT TTGTCGCCGG TGGCGCAGCC ATCAATGTCT TCTGTCGCCA GGTCGGCTTG
GATATGGAGG TGATCGATTG TGGCATTCTT CAGCCATTAG AGGGCGTCGA AGGGGTTATC
GACCAGAGAC TGGGTGCAGG AACGGGAGCG ATCCACAAGC AAGCGGCAAT GACATTGGGA
GCCGTCAAGC AAGGGCTGGA GATGGCGCGA ACACGCATAG AACTTCACCA TCAGCAAGGC
TGTAACCTTA TCGCATTAGG GGAGATGGGC ATAGGAAACA CCTCTTCTGC TGCGGCCATC
ATGGCCACTG TCATGGGGAT GAAGGGTGTC GATTGTGTCG GACGAGGCAC CGGAATCGAT
GCCGCTACCC TTAAGCGTAA GCAGATGCTG GTGGAGCAGG CGCTGCATAT TCATGAGGCC
GAATTAACCG ACCCCTATAA TATTTTAGCC TGCCTTGGTG GCTTTGAAAT AGTACAGATG
ACGGGGGCTA TGCTTGCCGC GGCGGAGAGA AATATGCTTG TCATCGTAGA TGGCTTTATC
GCAACGGCGG CGGCCATGGT CGCGGTGCAG ATAAATGCGA ACGTCCGCGA TTATATGATA
TTTGGTCATC AATCAGATGA ACGGGGTCAC TGCCTGATGA TGGAACACTT GCAAGCCCGA
CCCTTGCTCA GATTAGGGAT GAGGTTAGGC GAGGGCAGTG GCGCCGTATT GGCGTTACCA
CTTATTCGAG CCGCCGCCGG TTTCTATAAT GAGATGGCCA GCTTCAGCGA TGCCGGAATT
GAGATCTAA
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| Protein sequence | MFNISPANHE FDDEIQSKID NKTKPLGALG ELENLAKQLA LVLGKDKPEI INPKLLVFAA
DHGIASSGVS IAPSEVTTQM VMNFVAGGAA INVFCRQVGL DMEVIDCGIL QPLEGVEGVI
DQRLGAGTGA IHKQAAMTLG AVKQGLEMAR TRIELHHQQG CNLIALGEMG IGNTSSAAAI
MATVMGMKGV DCVGRGTGID AATLKRKQML VEQALHIHEA ELTDPYNILA CLGGFEIVQM
TGAMLAAAER NMLVIVDGFI ATAAAMVAVQ INANVRDYMI FGHQSDERGH CLMMEHLQAR
PLLRLGMRLG EGSGAVLALP LIRAAAGFYN EMASFSDAGI EI
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