| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3731 |
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| Symbol | |
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| ID | 5611547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4538146 |
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| End bp | 4539810 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934685 |
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| Product | cobyric acid synthase |
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| Protein accession | YP_001475463 |
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| Protein GI | 157376863 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1492] Cobyric acid synthase |
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| TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.699118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.182347 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAGA ACGATATGAA TACCGATAAC AGAGATAATC CAGAGGCTCA CAAAGCCAAA
GTACTGATGA TACAGGGCAC CACGTCAGAT GCGGGCAAGA GCACCTTGGC CGCGGGGCTA
TGTCGTCTGT TTGCCAGACG AGGGGAGCGG GTGGCGCCTT TCAAACCGCA AAACATGGCG
CTCAACAGTG CGGTAACTAT CGATGGCGGT GAGATTGGTC GCGCCCAAGC CCTGCAGGCC
ATTGCCTGTG GATTGCCCGC ACATACCGAT TTTAACCCTA TTTTGTTGAA ACCCAGCTCA
GATACCGGCG CTCAGGTCAT AGTTCAAGGC AAGGCGCTCG ATCAGATGGA GGCACAAACT
TTCTTCGGCC TTCAAGGGGG GCGGGAAGAG GGGCTGCCGG GCTATCGGGT CATGGCGATG
TCTGCAGTTT TGGACTCTTT CTCCCGTTTA ACCGATAACT ATGAAATGGT GATTGTCGAA
GGGGCGGGAA GTCCGGCCGA GATCAACCTC AGAGAGGGAG ATATCGCTAA CATGGGCTTT
GCCGAAGCCG TCGACTGTCC GGTGATTATC ATTGCCGATA TAGACAAAGG CGGTGTATTT
GCTCATCTGG TTGGCACGCT GGCGTTACTG AGTGAGTCGG AGCAAGCCAG AGTAAAAGGG
TTTGTAATCA ATCGATTTCG CGGTGACATC GCCTTGCTGC AATCGGGGCT GGATTGGTTA
GAGCGCTACA CCAATAAACC GGTTTTGGGT GTGCTTCCCT ATCTGCACGA TCTGCACCTG
GACGCCGAAG ATGCTCTGGC TCCACCGCTG ACAGTTTCAT CTTCCGAGCA ATTATTACAG
CCGAAGCAGA GCAAGCTCAA AGTGTTAGTT CTGGTGTTCC CCCGGATCAG CAACCACACC
GACTTCGATC CCTTAAGGCT TAACCCCTTA ATCGAATTTA GTTACGCCTC TTTGCAGAAC
GCAGAACCCG GGAGTGTTCA GGGGTTACCC GATGCCGATT TGATTATTCT GCCCGGCAGT
AAAAATGTAC GCGCAGACTT AGACTTTATC CGAGAACAGG CCTGGGATAC CGCCATCAAG
AAGCACTTAC GCTATGGCGG TAAAGTGCTT GGGCTCTGTG GCGGTTATCA GATGCTGGGT
CTGCTTATCG ATGACCCAGG TGGCGTCGAA GGCAAGGTTG GCGAGAGTGA GGGCTTAGGT
TTGCTGCCTC TGGTGACTGA GCTTAAAGCC AACAAAATAT TACGTCAGGT CACGGGTCAT
TTGTCCCTGC AGAGGGAACA GGCACCCGTC GAAGGCTATG AGATCCACTG CGGCCAGTCG
CAGGTGTTGA ATACTCCCTC TGGTGGCCAA CCTATCACCC TGTCGGTGAA AGAGGCATTC
GGTAAGTCGA CAAGCGACGA CCCCGTTTCT GATGGCTCCT TTTGTGATAA AGGGTTTTCA
GACGGAATGG TCTCAGATGA CAGCCTGATA TTCGGAACCT ATCTACATGG CCTTTTCGAC
TCACCCCAAG CTTGTGCACT GATACTGAAG TGGGCGGGAA TGGAGCATGT AGAAGCCGTA
GATATCGATG CAATTCGTGA ACAGCAGCTC GACAGGTTTG CCGACCAGTT AGAGAAAGAT
TTAGATATAG ATAAGTTGGA TAGGATCCTA GAAACTAGAA ACTAG
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| Protein sequence | MQKNDMNTDN RDNPEAHKAK VLMIQGTTSD AGKSTLAAGL CRLFARRGER VAPFKPQNMA
LNSAVTIDGG EIGRAQALQA IACGLPAHTD FNPILLKPSS DTGAQVIVQG KALDQMEAQT
FFGLQGGREE GLPGYRVMAM SAVLDSFSRL TDNYEMVIVE GAGSPAEINL REGDIANMGF
AEAVDCPVII IADIDKGGVF AHLVGTLALL SESEQARVKG FVINRFRGDI ALLQSGLDWL
ERYTNKPVLG VLPYLHDLHL DAEDALAPPL TVSSSEQLLQ PKQSKLKVLV LVFPRISNHT
DFDPLRLNPL IEFSYASLQN AEPGSVQGLP DADLIILPGS KNVRADLDFI REQAWDTAIK
KHLRYGGKVL GLCGGYQMLG LLIDDPGGVE GKVGESEGLG LLPLVTELKA NKILRQVTGH
LSLQREQAPV EGYEIHCGQS QVLNTPSGGQ PITLSVKEAF GKSTSDDPVS DGSFCDKGFS
DGMVSDDSLI FGTYLHGLFD SPQACALILK WAGMEHVEAV DIDAIREQQL DRFADQLEKD
LDIDKLDRIL ETRN
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