Gene Ssed_3729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3729 
Symbol 
ID5611545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4535845 
End bp4536729 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content49% 
IMG OID640934682 
Productperiplasmic binding protein 
Protein accessionYP_001475461 
Protein GI157376861 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.234745 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0538393 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGATGCA ATAAATATAA CTTGTTATTT TTAAACGAGA ACCAGATGAA AACAATAAGA 
AACAGCTTGT CGATATTCGC CATCTTCCTT CCGGCTTTAT CTATGGTGGC AATACCGGTA
AGCGCGGCAC CCGCAAAGCG CATTGTCGCT CTGTCACCTC ATTCGGTGGA GATGCTCTAT
GCGATCGGTG CCGGTGAGTC CATCGTAGCT ACTACAGAGC ATGCGGATTA TCCACAAGAG
GCGGTGCAAA TTCCCCGTAT CGGTGGCTAT CACGGTATAC AGATCGAGAG AGTGATTGAA
CTGGATCCCG ATCTGGTCGT GGTGTGGGGC AGCGGCAATA AGGCCGAAGA TGTCGAAAAG
CTTAATAAAT TGGGGTTCAA GGTGTATAAC AGCGACCCTA AGACACTGGA GGCCGTAGCC
GGTGAACTCG AAGAGCTGGG TGAGTTAACG GGCCATCAAG AGCAGGCATC TATGGTTATT
GCCGATTATC AATTGCAACT TAAAGAGTTA CGTGCGAGCA ATGCAGTTAA ACCTAAGGTA
AAGGTGTTCT ATCAGCTTTG GTCTACCCCC TTGATGTCCG TCGCAAAGAA TAGCTGGATT
CAGCAGATCA TCGATGTCTG TCATGGAGAG AATGTATTCT TTGATGCCGA CAGCGATTAT
CCGCAGCTTA GTTTGGAGAA CGTGCTGATG AAGATGCCGG AGGTGATCTT ACAAAGTCAG
GATAAGGGCA ATATTCTCGG CGTAGACTGG AGCCAGTGGC AGGAGATCCC TGCCGTTAAG
AATGAGCATA TCTATCCGCT GAATGCCGAT CTTTTACATC GCGCCGCTCC CCGCGCCATC
TTAGGAGTCA GATCTCTGTG TGATGCCTTG GATAAGGCGC GCTAA
 
Protein sequence
MRCNKYNLLF LNENQMKTIR NSLSIFAIFL PALSMVAIPV SAAPAKRIVA LSPHSVEMLY 
AIGAGESIVA TTEHADYPQE AVQIPRIGGY HGIQIERVIE LDPDLVVVWG SGNKAEDVEK
LNKLGFKVYN SDPKTLEAVA GELEELGELT GHQEQASMVI ADYQLQLKEL RASNAVKPKV
KVFYQLWSTP LMSVAKNSWI QQIIDVCHGE NVFFDADSDY PQLSLENVLM KMPEVILQSQ
DKGNILGVDW SQWQEIPAVK NEHIYPLNAD LLHRAAPRAI LGVRSLCDAL DKAR