Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3729 |
Symbol | |
ID | 5611545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4535845 |
End bp | 4536729 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934682 |
Product | periplasmic binding protein |
Protein accession | YP_001475461 |
Protein GI | 157376861 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.234745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0538393 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATGCA ATAAATATAA CTTGTTATTT TTAAACGAGA ACCAGATGAA AACAATAAGA AACAGCTTGT CGATATTCGC CATCTTCCTT CCGGCTTTAT CTATGGTGGC AATACCGGTA AGCGCGGCAC CCGCAAAGCG CATTGTCGCT CTGTCACCTC ATTCGGTGGA GATGCTCTAT GCGATCGGTG CCGGTGAGTC CATCGTAGCT ACTACAGAGC ATGCGGATTA TCCACAAGAG GCGGTGCAAA TTCCCCGTAT CGGTGGCTAT CACGGTATAC AGATCGAGAG AGTGATTGAA CTGGATCCCG ATCTGGTCGT GGTGTGGGGC AGCGGCAATA AGGCCGAAGA TGTCGAAAAG CTTAATAAAT TGGGGTTCAA GGTGTATAAC AGCGACCCTA AGACACTGGA GGCCGTAGCC GGTGAACTCG AAGAGCTGGG TGAGTTAACG GGCCATCAAG AGCAGGCATC TATGGTTATT GCCGATTATC AATTGCAACT TAAAGAGTTA CGTGCGAGCA ATGCAGTTAA ACCTAAGGTA AAGGTGTTCT ATCAGCTTTG GTCTACCCCC TTGATGTCCG TCGCAAAGAA TAGCTGGATT CAGCAGATCA TCGATGTCTG TCATGGAGAG AATGTATTCT TTGATGCCGA CAGCGATTAT CCGCAGCTTA GTTTGGAGAA CGTGCTGATG AAGATGCCGG AGGTGATCTT ACAAAGTCAG GATAAGGGCA ATATTCTCGG CGTAGACTGG AGCCAGTGGC AGGAGATCCC TGCCGTTAAG AATGAGCATA TCTATCCGCT GAATGCCGAT CTTTTACATC GCGCCGCTCC CCGCGCCATC TTAGGAGTCA GATCTCTGTG TGATGCCTTG GATAAGGCGC GCTAA
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Protein sequence | MRCNKYNLLF LNENQMKTIR NSLSIFAIFL PALSMVAIPV SAAPAKRIVA LSPHSVEMLY AIGAGESIVA TTEHADYPQE AVQIPRIGGY HGIQIERVIE LDPDLVVVWG SGNKAEDVEK LNKLGFKVYN SDPKTLEAVA GELEELGELT GHQEQASMVI ADYQLQLKEL RASNAVKPKV KVFYQLWSTP LMSVAKNSWI QQIIDVCHGE NVFFDADSDY PQLSLENVLM KMPEVILQSQ DKGNILGVDW SQWQEIPAVK NEHIYPLNAD LLHRAAPRAI LGVRSLCDAL DKAR
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