| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3727 |
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| Symbol | |
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| ID | 5610669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4533345 |
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| End bp | 4534997 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934680 |
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| Product | NADH dehydrogenase |
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| Protein accession | YP_001475459 |
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| Protein GI | 157376859 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases
[COG0607] Rhodanese-related sulfurtransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0490783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.104577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGT TATTGATTAT TGGTGGTGTT GCCGGAGGTG CCTCAGCAGC TGCGCGTGCC
AGACGATTAA ATGAAGAAGC TGAAATTATC ATGTTTGAAC GTGGTGAGTT TGTCTCCTTC
GCCAATTGTG GACTGCCCTA CCATATCAGC GGTGAAATAG CCGATAGAAA GTCCCTTATT
CTTCAGACGC CGCAAAGTTT CAAGTCTCGC TTTAATGTCG ATGTGCGTGT GCGCCAAGAG
GTGACTGCCA TCGACAGGGC GGCTAAAACC GTTACCGTAA AGAACCATGT GACCGGTGAG
CAGTATCTGG AAAGCTATGA TGCCTTAGTG CTCTCTCCGG GCGCAGCGCC TGTGGTCCCG
CCAATTCCCG GCCTGGATAC CCCGTTGACA TTTTCACTGC GAAATATTCC CGATATGGAC
AGGATCTTAA CCTTGCTCAA GGAGAGAAAG CCGGTTCATG CCACCGTTGT CGGTGGTGGT
TTTATCGGTT TGGAGATGAT GGAGGCGCTC AATGAACTGA ATATCGATGT CACTTTGCTT
GAGATGTCGC CACAGGTGAT GGCACCCGTC GATATCGAGA TGGCGAATAT GTTGCACAAG
GAGATTGTAG ACAAGGGCAT TGACCTGCGT CTCAACTGCG GCCTGAGTAG CGTCGAACAG
GTGGGCTCCG GCTTGGAGCT CTTCTTGAGT AACGGTGAGT CATTAAACAC AGGTATCTTG
ATCTCTGCGG TGGGCGTGAA GCCGGAAACC ACTTTGGCGG TCAATGCCGG TCTGGCTATC
GGTGAGCTCG GCGGTATTGT GGTCGATGAG CAGATGAGAA CCAGCGATGC CTCTATCTAT
GCCGTGGGCG ACGCCGTTGA GGAGTTTGAT TTTCTTACCG GTGAGAAGGC GCTGATCCCA
TTAGCCGGCC CGGCTAACCG TCAGGGGCGG ATCGTTGCGA ACAATATCTT TGGTGCAAAT
GATAGCTATA ACCGAACCCA AGGTACCGCA ATTTGCCGGG TGTTCGATCT GGCGGTAGCA
AGCACCGGGC TCAACGAGAA ACGTCTGGAG CGCAGCGGTA TTCCTTATGA GAAAATCTAT
GTACATGGTG CGAGCCATGC CAGCTACTTT CCTGGCGCAC ACCCGGTGTC ACTAAAACTG
CTGTTCAGTA CCGATGACGG CACAATCTTG GGCGCTCAAG CCATTGGCCG TGATGGTATC
GATAAGCGTA TCGATGTAAT GGCCGTGGCT ATCAGGGCCG AACTTACCGT GTACGATATG
CAGGATATGG AGCTGACCTA TGCTCCACCT TTTGGCTCGG CAAAAGATGT GCTGAATCAG
GCGGGTTTTG TCGCATCCAA TAGCTTGAAA GGTGAGACTC GGTTGTGCCA CACGGCCGAT
ATCGATGCAT TGAGCGACCA GCAAATTCTA CTCGATGTCA GAAATCCCGG TGAGCTGATG
AAATCCGGAG CGGTTGAGGG GGCTGTTAAT ATTCCCGTGG ATCAGCTCAG GCAGCGACTC
GAAGAACTGC CGAGAGACAA GGAGATATTG ATTATCTGTC AGGTCGGTTT GCGCGGCCAT
GTAGCCTATC GCATGTTGGC AAATCATGGG TTTATGGCGA AAAACCTCAC CGGTGGCTAT
AAGACCTATC AGGCGGTTCA CGCTAAATTT TAG
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| Protein sequence | MNKLLIIGGV AGGASAAARA RRLNEEAEII MFERGEFVSF ANCGLPYHIS GEIADRKSLI
LQTPQSFKSR FNVDVRVRQE VTAIDRAAKT VTVKNHVTGE QYLESYDALV LSPGAAPVVP
PIPGLDTPLT FSLRNIPDMD RILTLLKERK PVHATVVGGG FIGLEMMEAL NELNIDVTLL
EMSPQVMAPV DIEMANMLHK EIVDKGIDLR LNCGLSSVEQ VGSGLELFLS NGESLNTGIL
ISAVGVKPET TLAVNAGLAI GELGGIVVDE QMRTSDASIY AVGDAVEEFD FLTGEKALIP
LAGPANRQGR IVANNIFGAN DSYNRTQGTA ICRVFDLAVA STGLNEKRLE RSGIPYEKIY
VHGASHASYF PGAHPVSLKL LFSTDDGTIL GAQAIGRDGI DKRIDVMAVA IRAELTVYDM
QDMELTYAPP FGSAKDVLNQ AGFVASNSLK GETRLCHTAD IDALSDQQIL LDVRNPGELM
KSGAVEGAVN IPVDQLRQRL EELPRDKEIL IICQVGLRGH VAYRMLANHG FMAKNLTGGY
KTYQAVHAKF
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