Gene Ssed_3722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3722 
Symbol 
ID5610542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4529404 
End bp4530195 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content52% 
IMG OID640934675 
ProductABC transporter related 
Protein accessionYP_001475454 
Protein GI157376854 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.323053 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATCGA TGAAGAATAT CAGCAAAGTA TTTAAAACAG ATCTGGTGGA AACTCATGCG 
CTGCGTGAAT TTAATCTGGA GGTTAACGAA GGCGAATTTG TGGCGGTTAC CGGCCCATCT
GGCTCGGGTA AAACTACCTT CCTCAATATT GCAGGTTTGC TCGAAGGCTT TACCCTGGGT
GATTACTTTC TCGATGGCGT GAATATCTCA AACCTGAGCG ATAACAAGAG CGCGGCTATT
CGTAATGAGA AAATAGGCTT TATCTTCCAG GGTTTCAACC TGATACCGGA TCTGAATCTG
GCCGAAAATG TGGAAGTGCC GCTGCGATAT CGTGGCTTCA GCGCCAAAGA GCGTAAGCGC
CGTGTACAGC AGGCGCTGGA GCAGGTTGGC CTTGCCGCCC GTATGAAGCA CCTTCCCTCT
CAGCTTTCCG GTGGTCAGCA GCAGCGCGTC GCGATTGCCC GTGCCTTAGC CGGAGAGCCA
AGATTCCTCC TTGCCGATGA GCCAACGGGT AACCTCGACA GCATGATGGC GCGTCAGGTG
ATGGAGCTGT TAGAGAAGAT TAACAAGGCG GGGACCACGA TTATCATGGT GACTCACGAC
CCGGAACTTG CCCGCCGTGC TCAACGAAAT ATTCAGATTG TCGATGGCCA GGTATGTGAT
TTTACTATGT ATCAGGGAGG TGAGGGGTAC CAAAGTGGAG AAGGGCACCA AGGTGGCGAG
CGCACCAGCG AAAAGCCGCA CCTGGTGACA GAGTCTAGAG CGTCTGTGAA TCAAGATAAA
GTAGCGAGCT AA
 
Protein sequence
MLSMKNISKV FKTDLVETHA LREFNLEVNE GEFVAVTGPS GSGKTTFLNI AGLLEGFTLG 
DYFLDGVNIS NLSDNKSAAI RNEKIGFIFQ GFNLIPDLNL AENVEVPLRY RGFSAKERKR
RVQQALEQVG LAARMKHLPS QLSGGQQQRV AIARALAGEP RFLLADEPTG NLDSMMARQV
MELLEKINKA GTTIIMVTHD PELARRAQRN IQIVDGQVCD FTMYQGGEGY QSGEGHQGGE
RTSEKPHLVT ESRASVNQDK VAS