Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3722 |
Symbol | |
ID | 5610542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4529404 |
End bp | 4530195 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934675 |
Product | ABC transporter related |
Protein accession | YP_001475454 |
Protein GI | 157376854 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.323053 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTATCGA TGAAGAATAT CAGCAAAGTA TTTAAAACAG ATCTGGTGGA AACTCATGCG CTGCGTGAAT TTAATCTGGA GGTTAACGAA GGCGAATTTG TGGCGGTTAC CGGCCCATCT GGCTCGGGTA AAACTACCTT CCTCAATATT GCAGGTTTGC TCGAAGGCTT TACCCTGGGT GATTACTTTC TCGATGGCGT GAATATCTCA AACCTGAGCG ATAACAAGAG CGCGGCTATT CGTAATGAGA AAATAGGCTT TATCTTCCAG GGTTTCAACC TGATACCGGA TCTGAATCTG GCCGAAAATG TGGAAGTGCC GCTGCGATAT CGTGGCTTCA GCGCCAAAGA GCGTAAGCGC CGTGTACAGC AGGCGCTGGA GCAGGTTGGC CTTGCCGCCC GTATGAAGCA CCTTCCCTCT CAGCTTTCCG GTGGTCAGCA GCAGCGCGTC GCGATTGCCC GTGCCTTAGC CGGAGAGCCA AGATTCCTCC TTGCCGATGA GCCAACGGGT AACCTCGACA GCATGATGGC GCGTCAGGTG ATGGAGCTGT TAGAGAAGAT TAACAAGGCG GGGACCACGA TTATCATGGT GACTCACGAC CCGGAACTTG CCCGCCGTGC TCAACGAAAT ATTCAGATTG TCGATGGCCA GGTATGTGAT TTTACTATGT ATCAGGGAGG TGAGGGGTAC CAAAGTGGAG AAGGGCACCA AGGTGGCGAG CGCACCAGCG AAAAGCCGCA CCTGGTGACA GAGTCTAGAG CGTCTGTGAA TCAAGATAAA GTAGCGAGCT AA
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Protein sequence | MLSMKNISKV FKTDLVETHA LREFNLEVNE GEFVAVTGPS GSGKTTFLNI AGLLEGFTLG DYFLDGVNIS NLSDNKSAAI RNEKIGFIFQ GFNLIPDLNL AENVEVPLRY RGFSAKERKR RVQQALEQVG LAARMKHLPS QLSGGQQQRV AIARALAGEP RFLLADEPTG NLDSMMARQV MELLEKINKA GTTIIMVTHD PELARRAQRN IQIVDGQVCD FTMYQGGEGY QSGEGHQGGE RTSEKPHLVT ESRASVNQDK VAS
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