| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3718 |
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| Symbol | |
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| ID | 5610266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4523761 |
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| End bp | 4525131 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934671 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001475450 |
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| Protein GI | 157376850 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.53289 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATAG AATTGCCAAT TAAATTACCT TTTAACTTGA GGTTGGCATT ACGCACTAAA
CTGATATTAG GTACTGTGAT TGCCAGTGTA TCAGGAGTGT TACTCTCTTT GCTGTTCTTG
TCTGAGCCGG TTCAAGAGCA AGGTACGCAG TGGGGGGCGC TGGCACTGGT TTTACTGGCC
ACTATCTCAC TGTCCTGGGC GATGAGTTAT TTTGTTACCC GTAAATTAGC CACGAGTCTG
ATGGCGCTGG AAGTCGGCTT ACTCAACTTT AAAGATAATG ACTTCAGTGT CAGCATTCCC
GTTAGTGGCG ATGAGCAACT CAGCGCGCTG GCGACCCTCT TCAATGAGTC TGCTGCCAGC
CTGCGTCAGG AACGTCAATA TATCTACCAA CGTGAACTCC TGCTCGATAA AGTTATCCAG
AGTTCACCCA ATGTGATGCT ACTGCTCGAT GATGATCAGA GAGTCATTTA CGCTAACGAT
GCAGCCCGTC ACCTGTTTAA TCAGGGAGTG CGCATCGAAG GTTTAAACCT GACAACTCTG
CTTGAATCGG TGAGCGATGA GCTTGCCCGG GCATTACAAA ATCCTAAAGG TGGCCTGTTT
AGCCTGGCAG GCTGTGATGA GGGAGAAGAT GAAACCTGGC ATCTCTCACG GGGGCAGTTT
CTGCTTAACG GACAATACCA CCACCTGTTG CTGCTGAAGC AGATGACTCA TGAGCTCAAC
AGGCAGGAGG TGGCGGTGTG GAAGAAGGTG ATACGCATCA TCAGCCATGA GCTGAACAAT
TCTGTGGCGC CAATCGCCTC TATGGTGAAC TCGGGGCGTA TGATCACCCG GGAGTTAAAC
GATCCTAAAC TTAAGATGAT CTTCGATACC ATTGAGGATC GCACTAACCA TCTGAGCCAG
TTTATCTTCA ACTACGCGCG TTTCGCCAAG TTGCCTATGC CCAAAAAGTC TGTCGTAGAT
TGGCATAAAC TCACAGAGCA GCTGGGTCAA CATTATGCGT TTAAGTTGGT GGGTAAACTT
CCCGAATCTC AGGGGAGTTT AGATCTTATT CAGATGGAGC AGGTACTGCT TAACCTGCTT
AAGAATGCCC ACGAATCGGG GTCCGCTTCA GAAGGTATAA CTTTGAGTGT TGAAGCGTCG
ACATTGGTCG ATGGCACATC AGGGATCAGT ATCGAAATTA ATGATGAGGG GGCGGGGATG
TCTCCGGACG TTCTCAAGCA GGCCCTGTTA CCTTTCTACT CGACCAAACA GTCCGGTACA
GGCTTAGGCC TGCCCTTGTG CCGTGAAATT ATCGAGGCCC ACGATGGTCG CATCAGCCTG
CATAATCGCG ACGATGTGGG GCTTTGTGTG CGGGTGTGGT TACCCCAATA G
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| Protein sequence | MAIELPIKLP FNLRLALRTK LILGTVIASV SGVLLSLLFL SEPVQEQGTQ WGALALVLLA
TISLSWAMSY FVTRKLATSL MALEVGLLNF KDNDFSVSIP VSGDEQLSAL ATLFNESAAS
LRQERQYIYQ RELLLDKVIQ SSPNVMLLLD DDQRVIYAND AARHLFNQGV RIEGLNLTTL
LESVSDELAR ALQNPKGGLF SLAGCDEGED ETWHLSRGQF LLNGQYHHLL LLKQMTHELN
RQEVAVWKKV IRIISHELNN SVAPIASMVN SGRMITRELN DPKLKMIFDT IEDRTNHLSQ
FIFNYARFAK LPMPKKSVVD WHKLTEQLGQ HYAFKLVGKL PESQGSLDLI QMEQVLLNLL
KNAHESGSAS EGITLSVEAS TLVDGTSGIS IEINDEGAGM SPDVLKQALL PFYSTKQSGT
GLGLPLCREI IEAHDGRISL HNRDDVGLCV RVWLPQ
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