| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3706 |
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| Symbol | |
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| ID | 5610857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4511174 |
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| End bp | 4511605 |
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| Gene Length | 432 bp |
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| Protein Length | 143 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934659 |
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| Product | UspA domain-containing protein |
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| Protein accession | YP_001475438 |
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| Protein GI | 157376838 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0037155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTACTC GTCAAATACT CTGTCCCACA GATTTTTCCG AGACAGCATC TCATGCTTTG
GGTTATGCCA TGGAGATGGC CCGACACTAT GAGGTCGGTA TTCGTTTATT GCACGTCATC
GATAAGCCTT TTGGTGATAA ACACACGCGG GTCTTGTCTG TTACATCCGA GGAGCTTGCG
ACTCGGTTGG GGGGAGAGGC TGCTGAAAAG ATGCAAAAGC TGATAGATGA CCTGGATACT
GAGGTAAAAA TTGAGGTCTT GATCCGCCAC GGACATGCCA CTAAACAAAT TTTGGATGCG
GCCAAAGAGA TTAATGCCGG GATGATCGTC ATGGCCAGTC ATGGTTACAC AGGTCTGAGC
CACTTTCTGC ACCCGAATGT AGCTGAAGCC ATTGCCGGTG GAGCAGAGTG TCCGGTTTTA
GTTGTGAAGT GA
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| Protein sequence | MRTRQILCPT DFSETASHAL GYAMEMARHY EVGIRLLHVI DKPFGDKHTR VLSVTSEELA
TRLGGEAAEK MQKLIDDLDT EVKIEVLIRH GHATKQILDA AKEINAGMIV MASHGYTGLS
HFLHPNVAEA IAGGAECPVL VVK
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