| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3703 |
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| Symbol | |
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| ID | 5610141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4506716 |
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| End bp | 4508257 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934656 |
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| Product | membrane-flanked domain-containing protein |
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| Protein accession | YP_001475435 |
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| Protein GI | 157376835 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3428] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.41247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCGT TACTCCCTCA GTGGAAGGGC CTGTCTCCGT GGTCAATAGT AAGTTTTACC
TTTAACACCA TTCGTATCCT GGTAACGAAC GGCTATGCCA TGGTGCCTTT CATCTATACG
GGTTGGAAGC AGGGATTTGA TTCTCCCTGG ATGATTATAG CCCTTGTCGG GGTATGTTTA
CTGATCCTCA TCAGCGCGAT TATAGACTGG GCCATGTTTC GCTATCGCCT GTTCGATGAC
AAGTTGGGTA TTCGCCAGGG GCTAATTTTT AAGAAGGCTC ATGAAATCCC CCTAAGCAAG
ATTCAAAACA TCCGTCTGGA ACAGCCCCTC TATTTTAGGC CGATGGGCCT CTATAGTTTA
GTGGTTGAAA CTGCGGGATC GAAGAAAGAT GAAGCCGTAT TAGCCGCCGT CAGTTATCAA
CAAGCCATTG AACTCAAACA GCGGCTGGTT AATCCACAGC ACTCTTTCGA TTCAGGGTCA
GACAGCAAGG CCGAAACACA CCAGCACTCA ACGTCAAATC AAACCGGGAC AGAGGTGAGT
CCGGCGAATA ACCAAGCCCC CTTGGTGTTG AAAAAGATGA AATCACTGTT ACTGTTCGGT
TTCTATCAAA ATAATCTATT TTGGTTTGCC ATCATCGCAG GCCCTATTAT CGGTCAGTTT
GATTGGGAAG CCCTGGCAAA TACCGACCAA GCCCTGGGTG TGATGCATTG GTATGAGCAA
GCCATCGCCG TCAATATGCT GCTCCAGTTT ATCTTCGCCA GCTCACTAAT TATCGGCTTT
TATCTGTTAC TTTCACTGAT ATCTATGACA GCATCCGTAC TCAAGTATTA TCCCTATCGG
CTGAGTTTAA GTGGAGATAC ACTGCATAGA ACCGGCGGGA TAATAGCTAA GCAAAATGAC
GCCCTGACGC AACATCGCAT ACAGGTCATT CGCTTTACTC AGCCCATTAT CGGTCGCTTT
CTCAAGCTAT GGACAATTAA CTTCAAACAG GTCAAAGGGA CCGAGGTTGA ACAGGTCGCG
AAGAAGCATA TGCTGGTCCC CAGTATGACA AGAGAGGCCA TCGAAGCGTT AATGCCTAAA
CTGCCGGGGT TAGTCTCTGT GAGTTCGAGT CTGCCTCACT CCTACTCTCG GATCCATCTT
GGTTGGTTTT GGCGTCGAGG CTTTTTGCCA CTGCTCATCC CCATGGTAAA TACCTTATTT
CTGGGTCTGA ACCCCTTCAC TGAGCTATTA TGGTTTGCGG CCATCTGCTT TGTGGTTGGC
CTCTATTTGA GGTATCGCCA ATGGGGTTAC CTGCATCGGG GAGATGATTG CTGGGTCCAT
ACGGGTATGC TCGGACAAAC CTGGCACCTT ATCGCACTGA AAAAAGTTCA ACATGTGGCC
ATTACTCAAA CCCCGAGCCA GAAACGAAAA CAGTTGGCCA GCCTGGAACT GGGACTTGCC
AGCGGTCCCC TGACCATCCC CTATATGCCC TTGGGTGATG CCAGAGCTAT CGCCGAACGT
GCATTAGCGA TAACCGCCAA AGACCATACG AACTGGATCT AA
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| Protein sequence | MSPLLPQWKG LSPWSIVSFT FNTIRILVTN GYAMVPFIYT GWKQGFDSPW MIIALVGVCL
LILISAIIDW AMFRYRLFDD KLGIRQGLIF KKAHEIPLSK IQNIRLEQPL YFRPMGLYSL
VVETAGSKKD EAVLAAVSYQ QAIELKQRLV NPQHSFDSGS DSKAETHQHS TSNQTGTEVS
PANNQAPLVL KKMKSLLLFG FYQNNLFWFA IIAGPIIGQF DWEALANTDQ ALGVMHWYEQ
AIAVNMLLQF IFASSLIIGF YLLLSLISMT ASVLKYYPYR LSLSGDTLHR TGGIIAKQND
ALTQHRIQVI RFTQPIIGRF LKLWTINFKQ VKGTEVEQVA KKHMLVPSMT REAIEALMPK
LPGLVSVSSS LPHSYSRIHL GWFWRRGFLP LLIPMVNTLF LGLNPFTELL WFAAICFVVG
LYLRYRQWGY LHRGDDCWVH TGMLGQTWHL IALKKVQHVA ITQTPSQKRK QLASLELGLA
SGPLTIPYMP LGDARAIAER ALAITAKDHT NWI
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