| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3694 |
|---|
| Symbol | |
|---|
| ID | 5614085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4496154 |
|---|
| End bp | 4497599 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640934647 |
|---|
| Product | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
|---|
| Protein accession | YP_001475426 |
|---|
| Protein GI | 157376826 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0348] Polyferredoxin |
|---|
| TIGRFAM ID | [TIGR02745] cytochrome c oxidase accessory protein FixG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAACA ATAATAGTGA CCCAAAATAT CAAACGACGC GTAACCGCAT TCCTGTGAAA
CAGATCCCTG TAGATAGGGC TCCTTCAGCC AACCAGAGCT CAACGAAGAT CCAGATAAAG
GAGCAGAAGG GAGTGTTTCA GAAGATCCGC ACCGGGATGA ACACGGGGCT GGTGATGTTG
TTTGTGTTGC TTCCCTTTAT CTCTTATGGC GGTCGACAAG CCATTCTTTT TGATCTCGAA
GCGCAGCAGT TCTTTTTCTT CGGAACCAGT CTCTGGCCAC AGGATTTCAC CGTGCTGGCC
TGGGTCTTTA TCGCCGCCGC CTTCCTGCTC TTCTTCGTGA CCGTCTTCTG GGGGCGTGTC
TGGTGTGGCT ATCTGTGTCC GCAAACGGCC TGGACCTTTA TGTATGTCTG GATTGAAACC
CGCATCGAGG GCAACCGCAC TAAACGCTTA GCCTTAGATA AGGCCCCCTG GAGCGCGAAT
AAGTTCTTAA AGAGGCTCGC TAAACATCTG GCTTGGGGGC TAGCCGCACT GCTCACAGGT
TGCGCCTTTA TCGCCTACTT CGTTCCGGCT AGAGAACTCT ACCCGGATAT CTTTACCCTG
AAGGCCAGCT TCTGGGTTTC TGCCTGGGTC TGGTTCTTCG CCCTGTGTAC CTATCTCAAC
GCCGGTTGGA TGCGAGAGCA GATGTGCCTG CACTGCTGCC CCTACGCCCG ATTCCAGTCG
GCCATGTTCG ACGGCAACAC TAAAACCGTG ACCTATGATG CGACGCGGGG TGAGAGCCGT
GGCCCCCGCA AACGTAAACA GGAAACTGAG CTTGGAGACT GTATCGATTG TAACCTGTGC
GTGGATGTTT GCCCTACCGG CATAGATATC CGCAATGGCT TACAGTACGA GTGCATCAAC
TGCGGTGCCT GTGTCGATGC CTGCAATGAA ACCATGGGGA AATTCGGATA CCAGCCAAAC
CTTATCGGTT ACTTCAGTGA AAATGCTCTA AAGGACAAAG CAAAACCCGT ATACAGATCG
ACTAAGTTTA TCGGCTATGG CATGGCTGCC GTCATCATGT TTATCGTGAT TGGCATAGAT
ATGAGTGGCC GCAGCGATAT TCAGCTCAGT GTCATACGTG ACAGGCAGGA GCTATATCGT
GAAACCGTCG ATGATATGGT TGAAAATAGC TATACGCTCA AGATTCGAAA CAAGACCCAA
GAGACACGGT ATTATCGCCT ATCTGTCAAT AACCAGGATC TATTTCAACT CTCCGCGCAG
CAGGAGTTAG TGATAAAACC AGGTGAACTG CTCGATTACC CGGTTACGGT ACGTGCCGAT
CCACTCATGT TACCCGGCAC GCCGACTACA ATCACATTTT CGGTCTCTGA AGTTGGTCAC
GATGAGACTG CGGTTTTTCA GGAAACTAAC TTCTTCGGTC CAATTTTTAT AGCCAGTTGT
GGGTAA
|
|---|
| Protein sequence | MPNNNSDPKY QTTRNRIPVK QIPVDRAPSA NQSSTKIQIK EQKGVFQKIR TGMNTGLVML
FVLLPFISYG GRQAILFDLE AQQFFFFGTS LWPQDFTVLA WVFIAAAFLL FFVTVFWGRV
WCGYLCPQTA WTFMYVWIET RIEGNRTKRL ALDKAPWSAN KFLKRLAKHL AWGLAALLTG
CAFIAYFVPA RELYPDIFTL KASFWVSAWV WFFALCTYLN AGWMREQMCL HCCPYARFQS
AMFDGNTKTV TYDATRGESR GPRKRKQETE LGDCIDCNLC VDVCPTGIDI RNGLQYECIN
CGACVDACNE TMGKFGYQPN LIGYFSENAL KDKAKPVYRS TKFIGYGMAA VIMFIVIGID
MSGRSDIQLS VIRDRQELYR ETVDDMVENS YTLKIRNKTQ ETRYYRLSVN NQDLFQLSAQ
QELVIKPGEL LDYPVTVRAD PLMLPGTPTT ITFSVSEVGH DETAVFQETN FFGPIFIASC
G
|
|---|
| |