| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3693 |
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| Symbol | |
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| ID | 5614084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4494482 |
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| End bp | 4495942 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934646 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_001475425 |
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| Protein GI | 157376825 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGTA TTAATTTAAA TGCAAGCTCA GATCATGACG GCTTTCTGCC GGAAAACCAG
CTTATTCTCA ATGCGGTCAG CGAGGGGATT TATGGATTTA ACTTAGAAGG TAATGCGGTA
TTTGTTAATC CCGCAGCCGA GCGCATGACA GGGTGGAAAA GTGCCGAACT GCTCGGAAAG
AATATCCATG ATTGTCATCA TCATAGCCAC TTAGATGGTA GTCATTACCC CAAGGAAGAG
TGCCCGATAT ATAACACCTT AAAAGATGGT ATCGCCCGCG AGATAAGCCA TGAAGTATTC
TGGCGCAAGG ACGGCAGCAG CTTTCCCGTG CATTATTCTT CGACGCCGGT ATATAAAGAT
GACAGCCTCG TTGGTGTAGT CGCGATATTT CGTGATATCA GCATACAGAA ACAGACCGAA
CAGTCTCTCA GGCAGGCTCT GCAGCAGGTT CAGGCGCTAT CAGAGAAGCT CTCCTCGGAG
AATCAGTATC TTCAGCTGGA GCTGGCAGAT AAAACCGGTG ATGTGGGGAT CTCCGGTACC
AGTGTGCAAA TCAAGCAGCT CATCGGGCAG ATTAAGTTGG TTGCCAATAC CGAGAGTACG
GTGTTAATCA GCGGCGAAAA TGGAACCGGC AAAGAGTTAG TCGCTCGAAA CCTGCATAAA
CTCAGCAATC GTGCAGACAA GCCCTTAGTC TGTGTTAACT GCGCCGCGTT CTCCTCGAAC
CTGCTCGAGA GTGAACTCTT TGGCCACGAA AAAGGCGCCT ACACAGGCGC GACGAGTCGC
CGTAAGGGAC GGTTCGAACT GGCGAATAAC GGAACCCTAT TCCTCGATGA GGTGGCCGAG
CTGACTCTGG AAGCTCAGTC TAAACTCCTG CGAGTGATCC AGGAGCAGGA GTTTGAAAGA
GTCGGCAGCA GCGACACCAT TAAGGTCGAT ATCAGACTCA TCACCGCCAC CCACCATAAT
CTGCTCAAGC GGGTTGAACA GGGGCTATTT CGCATGGATC TCTACTACCG TCTCAATGTT
TTCCCTATTT TCGTCCCTCC ATTGAGAGAC AGACTCAGCG ATATCCCCGA GCTAGTCAGC
CATATCATTC AAGAGCTTAA TCGCAAGCTG GGCAAGAAGA TCACCCGTGT CAGTCACAAG
GGGCTGCGGA GGCTGATGCA ACACACTTGG CCGGGCAATG TGCGCGAGCT GCAAAATGTT
ATCGAAAGAG AGTCCATACT TTCTCAGAGT CAGGTATTGC AGCTGTCCCA GCAACTCGCT
CCAGAATCGT CACCAAATGA GACAGTAAAA AGCTCAAGCG ATCAGAGCCT TGCCGCGATA
GAGAAACAAC ATATCACCAA GGTATTGCAG GAGAGCCATT GGCGCATCTC AGGTCCCACA
GGCAGCGCAG CTAAGCTGGG CTTGCCCTCG AGTACGCTTA GATCCCGCAT GAAGAAACTT
AATATCACCC GCCCCGTGTA A
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| Protein sequence | MTGINLNASS DHDGFLPENQ LILNAVSEGI YGFNLEGNAV FVNPAAERMT GWKSAELLGK
NIHDCHHHSH LDGSHYPKEE CPIYNTLKDG IAREISHEVF WRKDGSSFPV HYSSTPVYKD
DSLVGVVAIF RDISIQKQTE QSLRQALQQV QALSEKLSSE NQYLQLELAD KTGDVGISGT
SVQIKQLIGQ IKLVANTEST VLISGENGTG KELVARNLHK LSNRADKPLV CVNCAAFSSN
LLESELFGHE KGAYTGATSR RKGRFELANN GTLFLDEVAE LTLEAQSKLL RVIQEQEFER
VGSSDTIKVD IRLITATHHN LLKRVEQGLF RMDLYYRLNV FPIFVPPLRD RLSDIPELVS
HIIQELNRKL GKKITRVSHK GLRRLMQHTW PGNVRELQNV IERESILSQS QVLQLSQQLA
PESSPNETVK SSSDQSLAAI EKQHITKVLQ ESHWRISGPT GSAAKLGLPS STLRSRMKKL
NITRPV
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