| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3690 |
|---|
| Symbol | |
|---|
| ID | 5613990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4492008 |
|---|
| End bp | 4492565 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934643 |
|---|
| Product | methylation site containing protein |
|---|
| Protein accession | YP_001475422 |
|---|
| Protein GI | 157376822 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACA GAATGAACAA CAGATATTCC CCAACACAAC GAGCCTCAGG CTTTACCTTA
ATTGAACTCG TCGTGGTAAT TATCGTGCTG GGAATACTGG CGGTTATCGC TCTGCCACAG
TTTATTAATA TCAAGCAAGA CGCTCAAATC TCGACGGTAG AGGGAACCGG TGGTGCCTTC
GCTGCGGGAA TAAAACTGGC CAATGTGAAA TGGGCATCTA AGGGTCATTC GGGCCCGGTC
GATAATCTTC AAGTCTATGA CGGTGGCAAT AGCGGTCAAC TGGATATAAA CCAGTGGGGG
TGGCCGGCTC AAAATTACCC GCCTTTCGAA GCAAGCCCAC GCCTTAACAA TACCAACGAC
TGCATGTCAG TATGGCGCAC CATACTGCTC GATGCGCCTA AGGTCTCCAC CTCTGCCGAT
GTGGCAGATT CGGTCTATAG AGCGACCTAT ATCAGCCCGG ATCAATGCAA ATTTTTCTTT
AATGAACTAC CCGCCCTTTC CATCTATTAT GATTCCCGCG ACGGCACGGT TACCACAGAT
TCAGATCCGG AAAGTTAA
|
|---|
| Protein sequence | MDDRMNNRYS PTQRASGFTL IELVVVIIVL GILAVIALPQ FINIKQDAQI STVEGTGGAF
AAGIKLANVK WASKGHSGPV DNLQVYDGGN SGQLDINQWG WPAQNYPPFE ASPRLNNTND
CMSVWRTILL DAPKVSTSAD VADSVYRATY ISPDQCKFFF NELPALSIYY DSRDGTVTTD
SDPES
|
|---|
| |