| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3689 |
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| Symbol | |
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| ID | 5614182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4491369 |
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| End bp | 4491929 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934642 |
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| Product | pilin, putative |
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| Protein accession | YP_001475421 |
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| Protein GI | 157376821 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATTCTG GCTCACTCAC TTCCATCGCA AAAACAGAAG GCTTTACTCT GATAGAGCTT
GTAGTGGTGA TCATTATACT TGGAATACTC GCTGTCGTCG CGCTACCCAA ATTTATCAAC
GTCTCTCAAG ATGCCCATTT ATCCACGGTT AAGGGTACGG GTGGTGCGTT CAAGTCGGGG
ATCAATCTGG CCAGAGCCGT ATGGGCCACA CGAGTTGGTT CCGGCCCCGC CGATGATCTA
CCGGTCTTCG GCACCGCTAC TGAGGGCGAG TTAGACTTTA ACGATAATGG CTGGCCGGCG
CAGCACTGGG GAACCGCAGA TTCAGATGGC GACTCACCTA AACTCGACAA CACCGATGAT
TGCATCTCTG TCTGGGAAAC CATTTTCGAA GGCGATGAGC CCAGTATCTC TGATGTGCTC
GATAGCGATG ACACCGACTA CAAGGCTAAC TACCTGTCAC CAGAGCGATG CCGTTATGAT
TACTCGGCCA ACAGCAACCT GAGCATCACC TATAACTCCC TCGACGGCAG TGTGACTATC
GACTCAGACC CAGATAGCTA A
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| Protein sequence | MYSGSLTSIA KTEGFTLIEL VVVIIILGIL AVVALPKFIN VSQDAHLSTV KGTGGAFKSG
INLARAVWAT RVGSGPADDL PVFGTATEGE LDFNDNGWPA QHWGTADSDG DSPKLDNTDD
CISVWETIFE GDEPSISDVL DSDDTDYKAN YLSPERCRYD YSANSNLSIT YNSLDGSVTI
DSDPDS
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