| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3671 |
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| Symbol | |
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| ID | 5613651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4473114 |
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| End bp | 4474556 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934624 |
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| Product | putative signaling protein |
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| Protein accession | YP_001475403 |
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| Protein GI | 157376803 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAAAA GCCTTAATTT CTTTACCTTT TTAGCGAAGG ATTTATCTGA GTTAAATTTT
AAAACTGATG TTGGCTCAGC CACAAAGTTG TTAGAAGAAA GGCATGTCCC TCCTATTTTT
AAATACGGTA TATTATTAAT ATCACCTGAT GGAGAAGAGC TAGTAGCTGA GTCCCCGGCA
CTTCCTGGAG GAACAGAGTT TATTTTTGGT CAAAGCGAAT GGTTTCAAAG AGCTAAGTTG
GCGGATCAGG CAGTTTTTAG TCGCCCCTTT AAAAACAGAG TTACCCATGA ACCCAGCATT
GTGATTGCCG CTCCCATAAA AAATGAAGAA AATAAAGTGG TTGCCGTTGT TGCTGGGATA
TTGGAATTGA ATCAAACGGA TCTATTCAAA TATTTATACT CCTCAGTACT AGAAGGCGGC
AGTGATATTC TTGTTATTTC TCCTAAAGAT AACCTGTTTG TTGCTTCGAG CATCCCGGAG
ATGGTACTTA AGCCAACACC GGAACCGGGT AGAAACCGAT TGCATGACAT GGCTATGAGA
GGATACCGGG GAGTTGGAGT GACGGTTAAC GCATACGGTG TTGAGGAACT CGCCGCCATA
ACCAGTATTG AAAGTACAGG ATGGTTCGTA GCCACTCGCC AAAAAACAAC AGAAGCTTAT
CTGCCAGTGA GACAGCTGAC AGAATCAATG CTGATGTATT TAGTATTGTC AGCAATTCTC
GGAGTGTTGA TCATTACTTT CGTTTTTATC ACTATGCTTT CCCCTTTAAA AAAAGCAGCG
CTTTCAGTTA AAGATATGGC ACAGGGAAAT ACTCCGCTAA AAAAACTCAC TATTGTGCAT
AAAGATGAAG TTGGTGACTT GATTGACGGC TTTAACAGTT TGGTGGATGC CATTGATGGG
CGGACTGATG CATTAGAAAC TGCAAATCAA AAACTAGCGG CCCTAAGTCT TACAGACGAG
CTGACAGGTT TGGGCAATCG GCGACATTTT AATGAAAAAT TGGAACAAGA GTGGATTCGG
GCATCACGTA CCAAGCAACC ACTGGCATTG GGGATGATAG ACATTGATTT TTTCAAAAAG
TATAACGACA AATACGGACA TGTCTTAGGG GATGAATGCC TTCAAGAGAT CTCCAAATTG
TTGGCTTCTA TCATCAGCCG AGCGGGTGAT CTTTCAGCGC GCTATGGTGG TGAAGAGTTT
GCTTTTATAG CCCCCGCTAC AGATGAAGAG GGCGCACGAG ATATAGCCGA AAAATTTCAA
GAGGCTCTCC ATTCACTGAC CTTACCTCAT GTGGAATCAG AGTTTGGCTT TGTCACCGCC
AGTATTGGAA TTGCGGTTAG GACTCCTACC AAGGGCGAGG AATCGATATG CCTTATTAAG
ATTGCGGACG AGGCGCTATA TCTTGCCAAA GAGCAGGGCC GAAATCGAGT GGTTCAACTT
TGA
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| Protein sequence | MRKSLNFFTF LAKDLSELNF KTDVGSATKL LEERHVPPIF KYGILLISPD GEELVAESPA
LPGGTEFIFG QSEWFQRAKL ADQAVFSRPF KNRVTHEPSI VIAAPIKNEE NKVVAVVAGI
LELNQTDLFK YLYSSVLEGG SDILVISPKD NLFVASSIPE MVLKPTPEPG RNRLHDMAMR
GYRGVGVTVN AYGVEELAAI TSIESTGWFV ATRQKTTEAY LPVRQLTESM LMYLVLSAIL
GVLIITFVFI TMLSPLKKAA LSVKDMAQGN TPLKKLTIVH KDEVGDLIDG FNSLVDAIDG
RTDALETANQ KLAALSLTDE LTGLGNRRHF NEKLEQEWIR ASRTKQPLAL GMIDIDFFKK
YNDKYGHVLG DECLQEISKL LASIISRAGD LSARYGGEEF AFIAPATDEE GARDIAEKFQ
EALHSLTLPH VESEFGFVTA SIGIAVRTPT KGEESICLIK IADEALYLAK EQGRNRVVQL
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