| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3666 |
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| Symbol | |
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| ID | 5613294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4466881 |
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| End bp | 4468359 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934619 |
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| Product | putative monovalent cation/H+ antiporter subunit D |
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| Protein accession | YP_001475398 |
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| Protein GI | 157376798 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.752681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAGCCC ATCTGCCTAT TTTACAAGTT ATTGTGCCGC TGATGGCAGC GCCTCTATGC
TGGTTCCTAA ACCGCTCCAA ACTAGTATGG CTATTTGCCC TACTCGTGAG CGCCTTTACC
TGCCTCAATA GCATATTTCT ACTGCAACAG GTAATGAGCT CCGGCACCAT TATCTATCAG
CTCGGCGGGT GGGATGCCCC TTGGGGGATC GAATATCGTA TCGATGAGCT CAACGCGCTT
CTGCTGCTGA TCATCTCAGC CGTCGGTACG GTAGTGCTGT TTGCAGCGCA TACCAGCATT
CAAAAAGAGC TAGCAGAAGA TCGCCACACG CTCTTTTATA GTCTGTACCT ACTATCAATA
ACGGGTATGT TTGGCATCGT CTCCACCGGC GATGTGTTTA ATGTATTCGT ATTTCTGGAG
ATATCGTCGC TATCAGCCTA CGCGCTGATT GCGCTCGGCA AAGATAGACG CGCCCTTTGG
GCCGCCTATC AATACCTGAT CATGGGCACT ATCGGTGCGA CCTTTATTTT GATCGGCATC
GGCTTGCTGT ACCAGATGAC GGGGACGCTG AATATGGCAG ATCTCGCCAA CCGGCTTGCA
GAGGTAAACC AAACGCGCAC CGTATTTGCC GCATTTGCCT TCTTAATCGT CGGCGTCTGT
CTGAAGCTAG CACTATTCCC ACTTCACCTG TGGTTACCTA ATGCCTACGC CTACGCTCCC
TCAATAGTGA CCGCATTCCT CGCTGCTACG GCGACTAAAG TTGCGGTTTA CCTATTGATC
CGCTTTAGCT TTACGGTATT TGGTATCGAG TTCTCCTTCT CCACCCTGCC GCTGCAGAGC
ATATTTATGG TGCTTGGGCT GGTCGGCATA TTCGCGGCCT CTACGGCGGC GATATATAAA
ACCAATGTCA AACATATCTT CGCCTATTCG AGCATCGCTC AGGTTGGCTA CATGATTATT
GGCTATGCCA TCCACACCAG CACAGGGCTT ATGGCCACAC TGCTGCACCT GTTTAACCAC
GCCTTAATGA AGAGCGCCCT GTTTTTGGCG TTAGGCGCGG TGATGTACCG CATCGGCAGT
GTACAGCTTA GCCAGTTCCA AGGGTTAGGA CGACAGATGC CCCTCACCAT GGCAGCCATC
GTTGTCGGTG GCCTGAGTTT GATTGGCGTG CCTCTGACAG TCGGGTTTGT CAGCAAGTGG
TACCTGCTTG TAGCCGCCGT TGAGGTGGGA ATGTGGCCGG TAGCAGTACT GGTGCTACTG
GGATCACTAT TGGCCGTCCT TTATATCTGG CGAATCGTTG AGATCGCCTA TTTCAAGCCC
CCTCTACCGG GTCGTGAAGC GGTGCAGGAA GCCCCTTGGA CCTTCCTCGC CCCAATTTGG
GCACTGGTAC TGGCCAATAT CTATTTTGGC ATCGATACCC GCCTTAGTGT GCAGGTGGCA
CAGGCGGCTT CTCAAAGCTT GTTTGGAATT AACCCATGA
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| Protein sequence | MLAHLPILQV IVPLMAAPLC WFLNRSKLVW LFALLVSAFT CLNSIFLLQQ VMSSGTIIYQ
LGGWDAPWGI EYRIDELNAL LLLIISAVGT VVLFAAHTSI QKELAEDRHT LFYSLYLLSI
TGMFGIVSTG DVFNVFVFLE ISSLSAYALI ALGKDRRALW AAYQYLIMGT IGATFILIGI
GLLYQMTGTL NMADLANRLA EVNQTRTVFA AFAFLIVGVC LKLALFPLHL WLPNAYAYAP
SIVTAFLAAT ATKVAVYLLI RFSFTVFGIE FSFSTLPLQS IFMVLGLVGI FAASTAAIYK
TNVKHIFAYS SIAQVGYMII GYAIHTSTGL MATLLHLFNH ALMKSALFLA LGAVMYRIGS
VQLSQFQGLG RQMPLTMAAI VVGGLSLIGV PLTVGFVSKW YLLVAAVEVG MWPVAVLVLL
GSLLAVLYIW RIVEIAYFKP PLPGREAVQE APWTFLAPIW ALVLANIYFG IDTRLSVQVA
QAASQSLFGI NP
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