Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3658 |
Symbol | |
ID | 5612922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4458251 |
End bp | 4461403 |
Gene Length | 3153 bp |
Protein Length | 1050 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640934611 |
Product | nucleoside phosphorylase-like protein |
Protein accession | YP_001475390 |
Protein GI | 157376790 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0775] Nucleoside phosphorylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTATTT ATCAAGAAGT TGAGCTAAGC GAGTTAAACG AGTCTTATGA TATTGATTTT TTGATCATTA CAGCGACTAC TGTGGAGTTA AACGCAGCAA TAGAGTTTTT AACCCCTATT GAAGATGATA TCCTCCAAGC TTATTACAAC GCCAACACCT ATTACATCGG TTTATTTGGT AATTTCATAT GTGCTATTGT CAAAACCAAT AGTATGGGAG CCATATCTTC AGGAGCCTCT TTACAGACCA CTCAGGAATC CATTGCAGCC CTTACTCCCA AAGCGATAAT TATGGGGGGG ATAGCTTTGG GTAAAGAAAA AGACAAACAA AAGCTAGGTG ATATATTAGT CAGTAAGTCC GTAGTATTCT ATGAGCAAGC CCGCGTTAAT GACAATGGAA GTATTGAATA TAGAGGCATA AAACCGGAAG CGAATAGGAC CTTAATTAAC AGGTTAACTC AAAATTCTAC ACATGATTAT TTGTTTAATA ATAAAAATAA AGATGCAACC GTAATATCAG GCCCGATACT TTCTGGAGAA AAGCTTATTG ACAATAATCA ATTCAAACAA AAACTCCTTA GTCACTTTCC TGACGCCATT GGTGGTGAAA TGGAAGCACA TGGAGTTTAT GTTGCGTGCC ATGATAAAAA CGTTCCATGG ATTATTGTAA AAACAATTTG CGACTGGGCT GATGGACATA AAGAAAAATC CTTCCAATCT GAAAGTGCAT ATATAGCATT TTCATTTATT CATCGTGCCC TTGAGTCTAA ATTTGCCTTT AGCAACCTAA AGATTCTTCC ATTTAAAAAA AAAAGGGATT CCCCAGAAGT TAATTTAGAT GCAATAAATA TATTACCTCT CTTAGTCAGC CGGAGAGATT TGAGCAAAGT ATTAAGTAAT CGGGAAATAA TTAAAGATTC ATCAAAAAAA GTTTACTATG AGTACTTCTT TTTTGAAAAT CGTGGAAGAG TTGAAGGTTT TTTGTTTATA GGGAAAAATG TAACTATAAC AAATACATTA GATAGCTTTG TGAGCACTTT TGAAAAACCT AAAATTCTTA ATGTTTACGT GACAAAAAAA TATAATGCAA CAGGACCTAT TGACAGAATA AGCCATCTAA ATAAAGAAAC AGCAAAAAGA CAGCTGAGCG CAACAATTTA TGATGGCATA CAGTATCTTG AGGAAACAAT TTGGGACTCA ACATTCAAAA GTTATGATGA TACAAAACAT CATAAGAGAA GTGATTATAT TGATCAAAGT CTTTATACGT ATCATGAAGA CGATACCAAC TTAGGGCATG GTACTGAGTA TTTCAAATCA ATTCTAGCCG ACAAAATGGG AAGCAGTATT TCTATCATAT TTGGTAGTGG TGGGGTAGGA AAAACGACCC TATGTGATGC ACTTAAAAGT GATATTGAAA GAGATAGTGA CGTAAGAAAA AAAGGCGTCT TCTTGATTCG AGGGGAAAGA ACATCTAGTC TGAAAAATTT TCATGATATT TATGTCGAAT CACTACTAGA TCTATTTGAA GCGTTTAAGG AAGAAAGTAA CTTATCAAAT TTATCAACTA ATGACTTTAG CATAAATTAT GCCTGCGGAA ATATTCAGGT TATTATTGAT GGTTTAGATG AAATAGATAG CGCACTAGGA GAACGGTTTA ATTTAGAGCG ATTTTTTCAA TCTCTGTCAG ATTTAGACGA AAGATTTCAC AACACGAAAA TCATATTGAC AACGCGAGAC TATTTTGCAA AAAATCTAGT TTCGTCTTCT CCATTAATCA AGAAATTTAA ATTAAACGGC TTCACTGAAG GTGATATTGA GAAATTCAAA AAAATAAAAC TAAAAACTGA TTCTCAAAGA ACGAAATTTG ATAAACTACT AGAAAGTAAA AAATTAAGGA AAGGTAGCTT CTCTCTTCCA GTTATTATTA ACTTAGCCTG CCAAGCTGTA CTTGGTGATG GACCACATAA CAAATCATAT AATGAAAACT CTGAATACCT TATTTCAGAC CATGTCTACG ATTCTATTTT AGACTATATG TTAAATAGAG AAATCGAAAA ACAAAAAATA AATTGCACTG TTGACGACCT GTTTTTACTA CTTGTTGAAA TAGTAACTAG CCACAACAAC AAAATATCTA CTTCAGAGTT AAAAGAGTAT GTTGAGCTAT CTTTTAATGA AACTGTTAAT AAGTTTTTAA GGAATCCTAT TTTCAGTGTA ACGAGTGACT TCATTTCAAT AAAAGAGGAG GCGCTATGCT CTTTAGTAAG ATGCCGTTAT GCTCGTTATC TTTTGTTAAA AAACATATCA CTGACAGAAA AAATATCTGA ATTACTAAAG GATTCTTACA AAGGAAATGG AGAGATTTAC TCTTCACTCG TTGATACAAT TGACACCAAC AATGAAAAAT TCATAGAAAA CTCAACTAAA CTTTTAAAAC AAATGTCTCA TAAAGAATCT CACAGCACCT CTAATTATGA GAAAAGTAAA TACAAAAAAT CCATTTCAGC AATGCTTTAC ATACTGATGT CAAATAGAAA TTGTGATAAC AAACCTGATA GAAGTAATTT CTTGTTGCAA ATCAAAGGTT CTACGACTAA CACAACAAGT ATTGACGGAC TACATATTTA TGGAGAGTTT CACACTTTAG ACTTTAGCAA CATAACAATA ACAAATTCAT ATTTTTCAGA ATTTGAAAAA TTTGAAGACT GCATATTCCC AAGTGAATCA AAAGTTGTTT TTTCTTATTG TGAGTTCAAC AAAATAACAT TAAAAAAAGC AAACAATATT AAAACAGACA TATTCGAAGC TTCCTGTAAG TTTGAAGATT GCAACATAAT GAGTGAAATA AAAAACCAGC AGGATGATGA TTGCATCAAG CAGAAACGAG TGCGAGACAA TATAGTCTCA ATATCAAGAT ATATTGATAC AACACAGAGG TCTAGCAATT TAATAAAGTT AAACACCAGT GTGAAATGGA GTAAGTCACA TAAAGGTTTC TTAAAATCAC TTATAAGTGA AAGTTTTTTA GAATTTACCA ATAAGGGACT TTATAAAATC AATCATGATT ATTACGATAA CCTTCCTGAT ATAAAACTAG GCCGATTTCC TGACAAGCTA GATGAGATTG TAGCTAAATT AGCAAAAAAA TAA
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Protein sequence | MSIYQEVELS ELNESYDIDF LIITATTVEL NAAIEFLTPI EDDILQAYYN ANTYYIGLFG NFICAIVKTN SMGAISSGAS LQTTQESIAA LTPKAIIMGG IALGKEKDKQ KLGDILVSKS VVFYEQARVN DNGSIEYRGI KPEANRTLIN RLTQNSTHDY LFNNKNKDAT VISGPILSGE KLIDNNQFKQ KLLSHFPDAI GGEMEAHGVY VACHDKNVPW IIVKTICDWA DGHKEKSFQS ESAYIAFSFI HRALESKFAF SNLKILPFKK KRDSPEVNLD AINILPLLVS RRDLSKVLSN REIIKDSSKK VYYEYFFFEN RGRVEGFLFI GKNVTITNTL DSFVSTFEKP KILNVYVTKK YNATGPIDRI SHLNKETAKR QLSATIYDGI QYLEETIWDS TFKSYDDTKH HKRSDYIDQS LYTYHEDDTN LGHGTEYFKS ILADKMGSSI SIIFGSGGVG KTTLCDALKS DIERDSDVRK KGVFLIRGER TSSLKNFHDI YVESLLDLFE AFKEESNLSN LSTNDFSINY ACGNIQVIID GLDEIDSALG ERFNLERFFQ SLSDLDERFH NTKIILTTRD YFAKNLVSSS PLIKKFKLNG FTEGDIEKFK KIKLKTDSQR TKFDKLLESK KLRKGSFSLP VIINLACQAV LGDGPHNKSY NENSEYLISD HVYDSILDYM LNREIEKQKI NCTVDDLFLL LVEIVTSHNN KISTSELKEY VELSFNETVN KFLRNPIFSV TSDFISIKEE ALCSLVRCRY ARYLLLKNIS LTEKISELLK DSYKGNGEIY SSLVDTIDTN NEKFIENSTK LLKQMSHKES HSTSNYEKSK YKKSISAMLY ILMSNRNCDN KPDRSNFLLQ IKGSTTNTTS IDGLHIYGEF HTLDFSNITI TNSYFSEFEK FEDCIFPSES KVVFSYCEFN KITLKKANNI KTDIFEASCK FEDCNIMSEI KNQQDDDCIK QKRVRDNIVS ISRYIDTTQR SSNLIKLNTS VKWSKSHKGF LKSLISESFL EFTNKGLYKI NHDYYDNLPD IKLGRFPDKL DEIVAKLAKK
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