| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3658 |
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| Symbol | |
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| ID | 5612922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4458251 |
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| End bp | 4461403 |
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| Gene Length | 3153 bp |
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| Protein Length | 1050 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 640934611 |
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| Product | nucleoside phosphorylase-like protein |
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| Protein accession | YP_001475390 |
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| Protein GI | 157376790 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0775] Nucleoside phosphorylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATTT ATCAAGAAGT TGAGCTAAGC GAGTTAAACG AGTCTTATGA TATTGATTTT
TTGATCATTA CAGCGACTAC TGTGGAGTTA AACGCAGCAA TAGAGTTTTT AACCCCTATT
GAAGATGATA TCCTCCAAGC TTATTACAAC GCCAACACCT ATTACATCGG TTTATTTGGT
AATTTCATAT GTGCTATTGT CAAAACCAAT AGTATGGGAG CCATATCTTC AGGAGCCTCT
TTACAGACCA CTCAGGAATC CATTGCAGCC CTTACTCCCA AAGCGATAAT TATGGGGGGG
ATAGCTTTGG GTAAAGAAAA AGACAAACAA AAGCTAGGTG ATATATTAGT CAGTAAGTCC
GTAGTATTCT ATGAGCAAGC CCGCGTTAAT GACAATGGAA GTATTGAATA TAGAGGCATA
AAACCGGAAG CGAATAGGAC CTTAATTAAC AGGTTAACTC AAAATTCTAC ACATGATTAT
TTGTTTAATA ATAAAAATAA AGATGCAACC GTAATATCAG GCCCGATACT TTCTGGAGAA
AAGCTTATTG ACAATAATCA ATTCAAACAA AAACTCCTTA GTCACTTTCC TGACGCCATT
GGTGGTGAAA TGGAAGCACA TGGAGTTTAT GTTGCGTGCC ATGATAAAAA CGTTCCATGG
ATTATTGTAA AAACAATTTG CGACTGGGCT GATGGACATA AAGAAAAATC CTTCCAATCT
GAAAGTGCAT ATATAGCATT TTCATTTATT CATCGTGCCC TTGAGTCTAA ATTTGCCTTT
AGCAACCTAA AGATTCTTCC ATTTAAAAAA AAAAGGGATT CCCCAGAAGT TAATTTAGAT
GCAATAAATA TATTACCTCT CTTAGTCAGC CGGAGAGATT TGAGCAAAGT ATTAAGTAAT
CGGGAAATAA TTAAAGATTC ATCAAAAAAA GTTTACTATG AGTACTTCTT TTTTGAAAAT
CGTGGAAGAG TTGAAGGTTT TTTGTTTATA GGGAAAAATG TAACTATAAC AAATACATTA
GATAGCTTTG TGAGCACTTT TGAAAAACCT AAAATTCTTA ATGTTTACGT GACAAAAAAA
TATAATGCAA CAGGACCTAT TGACAGAATA AGCCATCTAA ATAAAGAAAC AGCAAAAAGA
CAGCTGAGCG CAACAATTTA TGATGGCATA CAGTATCTTG AGGAAACAAT TTGGGACTCA
ACATTCAAAA GTTATGATGA TACAAAACAT CATAAGAGAA GTGATTATAT TGATCAAAGT
CTTTATACGT ATCATGAAGA CGATACCAAC TTAGGGCATG GTACTGAGTA TTTCAAATCA
ATTCTAGCCG ACAAAATGGG AAGCAGTATT TCTATCATAT TTGGTAGTGG TGGGGTAGGA
AAAACGACCC TATGTGATGC ACTTAAAAGT GATATTGAAA GAGATAGTGA CGTAAGAAAA
AAAGGCGTCT TCTTGATTCG AGGGGAAAGA ACATCTAGTC TGAAAAATTT TCATGATATT
TATGTCGAAT CACTACTAGA TCTATTTGAA GCGTTTAAGG AAGAAAGTAA CTTATCAAAT
TTATCAACTA ATGACTTTAG CATAAATTAT GCCTGCGGAA ATATTCAGGT TATTATTGAT
GGTTTAGATG AAATAGATAG CGCACTAGGA GAACGGTTTA ATTTAGAGCG ATTTTTTCAA
TCTCTGTCAG ATTTAGACGA AAGATTTCAC AACACGAAAA TCATATTGAC AACGCGAGAC
TATTTTGCAA AAAATCTAGT TTCGTCTTCT CCATTAATCA AGAAATTTAA ATTAAACGGC
TTCACTGAAG GTGATATTGA GAAATTCAAA AAAATAAAAC TAAAAACTGA TTCTCAAAGA
ACGAAATTTG ATAAACTACT AGAAAGTAAA AAATTAAGGA AAGGTAGCTT CTCTCTTCCA
GTTATTATTA ACTTAGCCTG CCAAGCTGTA CTTGGTGATG GACCACATAA CAAATCATAT
AATGAAAACT CTGAATACCT TATTTCAGAC CATGTCTACG ATTCTATTTT AGACTATATG
TTAAATAGAG AAATCGAAAA ACAAAAAATA AATTGCACTG TTGACGACCT GTTTTTACTA
CTTGTTGAAA TAGTAACTAG CCACAACAAC AAAATATCTA CTTCAGAGTT AAAAGAGTAT
GTTGAGCTAT CTTTTAATGA AACTGTTAAT AAGTTTTTAA GGAATCCTAT TTTCAGTGTA
ACGAGTGACT TCATTTCAAT AAAAGAGGAG GCGCTATGCT CTTTAGTAAG ATGCCGTTAT
GCTCGTTATC TTTTGTTAAA AAACATATCA CTGACAGAAA AAATATCTGA ATTACTAAAG
GATTCTTACA AAGGAAATGG AGAGATTTAC TCTTCACTCG TTGATACAAT TGACACCAAC
AATGAAAAAT TCATAGAAAA CTCAACTAAA CTTTTAAAAC AAATGTCTCA TAAAGAATCT
CACAGCACCT CTAATTATGA GAAAAGTAAA TACAAAAAAT CCATTTCAGC AATGCTTTAC
ATACTGATGT CAAATAGAAA TTGTGATAAC AAACCTGATA GAAGTAATTT CTTGTTGCAA
ATCAAAGGTT CTACGACTAA CACAACAAGT ATTGACGGAC TACATATTTA TGGAGAGTTT
CACACTTTAG ACTTTAGCAA CATAACAATA ACAAATTCAT ATTTTTCAGA ATTTGAAAAA
TTTGAAGACT GCATATTCCC AAGTGAATCA AAAGTTGTTT TTTCTTATTG TGAGTTCAAC
AAAATAACAT TAAAAAAAGC AAACAATATT AAAACAGACA TATTCGAAGC TTCCTGTAAG
TTTGAAGATT GCAACATAAT GAGTGAAATA AAAAACCAGC AGGATGATGA TTGCATCAAG
CAGAAACGAG TGCGAGACAA TATAGTCTCA ATATCAAGAT ATATTGATAC AACACAGAGG
TCTAGCAATT TAATAAAGTT AAACACCAGT GTGAAATGGA GTAAGTCACA TAAAGGTTTC
TTAAAATCAC TTATAAGTGA AAGTTTTTTA GAATTTACCA ATAAGGGACT TTATAAAATC
AATCATGATT ATTACGATAA CCTTCCTGAT ATAAAACTAG GCCGATTTCC TGACAAGCTA
GATGAGATTG TAGCTAAATT AGCAAAAAAA TAA
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| Protein sequence | MSIYQEVELS ELNESYDIDF LIITATTVEL NAAIEFLTPI EDDILQAYYN ANTYYIGLFG
NFICAIVKTN SMGAISSGAS LQTTQESIAA LTPKAIIMGG IALGKEKDKQ KLGDILVSKS
VVFYEQARVN DNGSIEYRGI KPEANRTLIN RLTQNSTHDY LFNNKNKDAT VISGPILSGE
KLIDNNQFKQ KLLSHFPDAI GGEMEAHGVY VACHDKNVPW IIVKTICDWA DGHKEKSFQS
ESAYIAFSFI HRALESKFAF SNLKILPFKK KRDSPEVNLD AINILPLLVS RRDLSKVLSN
REIIKDSSKK VYYEYFFFEN RGRVEGFLFI GKNVTITNTL DSFVSTFEKP KILNVYVTKK
YNATGPIDRI SHLNKETAKR QLSATIYDGI QYLEETIWDS TFKSYDDTKH HKRSDYIDQS
LYTYHEDDTN LGHGTEYFKS ILADKMGSSI SIIFGSGGVG KTTLCDALKS DIERDSDVRK
KGVFLIRGER TSSLKNFHDI YVESLLDLFE AFKEESNLSN LSTNDFSINY ACGNIQVIID
GLDEIDSALG ERFNLERFFQ SLSDLDERFH NTKIILTTRD YFAKNLVSSS PLIKKFKLNG
FTEGDIEKFK KIKLKTDSQR TKFDKLLESK KLRKGSFSLP VIINLACQAV LGDGPHNKSY
NENSEYLISD HVYDSILDYM LNREIEKQKI NCTVDDLFLL LVEIVTSHNN KISTSELKEY
VELSFNETVN KFLRNPIFSV TSDFISIKEE ALCSLVRCRY ARYLLLKNIS LTEKISELLK
DSYKGNGEIY SSLVDTIDTN NEKFIENSTK LLKQMSHKES HSTSNYEKSK YKKSISAMLY
ILMSNRNCDN KPDRSNFLLQ IKGSTTNTTS IDGLHIYGEF HTLDFSNITI TNSYFSEFEK
FEDCIFPSES KVVFSYCEFN KITLKKANNI KTDIFEASCK FEDCNIMSEI KNQQDDDCIK
QKRVRDNIVS ISRYIDTTQR SSNLIKLNTS VKWSKSHKGF LKSLISESFL EFTNKGLYKI
NHDYYDNLPD IKLGRFPDKL DEIVAKLAKK
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