| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3653 |
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| Symbol | |
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| ID | 5612789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4451668 |
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| End bp | 4453221 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934606 |
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| Product | nitrite reductase (cytochrome; ammonia-forming) |
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| Protein accession | YP_001475385 |
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| Protein GI | 157376785 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA AAAAGCTGGC AATTGCTGTC ATGCTATCAA CCGTATTTAC CGGTTATAGT
ATGGCAACAG AAGTCGATTT ATATAAAAGT GAAAATTGGA AAAAACAGTT CCCTGAACAA
TATACTACTT GGGCTGAAAC AGAAGAGACC ACTCCTGAAT CAGGCAAATT GGATGACTTC
TTAGCTTCTA ATCCAAACCT TGTCAGCGCT TGGGCTGGCT ACGGTTTTGC CAAAGATTAT
AATCGTGCCA GAGGTCATCA ATTTGCGATG ACTGATATAA TAAAAACGCT GCGTACAGGG
CACCCGGTTG TCGGCCATGA TGGTAAAGTC GTTGGCGAGG CAATGCCTGC TAACTGCTGG
TCTTGTAAAA CACCCGATAT CGCTCGCATG TATGACAAGG TGGGGGAAGC TAATTTCTCT
GACAATAGCT GGTCAACCTG GGGCCACGAA ATGTCTAATT CAATCGGTTG CGCCGATTGT
CATGAGTTAG GCAGTGATGA AATCAGAATT AGTCGTCCCT ATGCCGCTCG AGCAATGAAA
TCGATTGGCA AAGACTTTTC CAAGCAAACA CAGACTATGC AAGCCAGCCA GACTTGTGCT
CAATGCCATA TTGAATACTA CTTCGAAGGT TCTGACAGTA AGAAAGTTCG CTACCCTTGG
GATCATTGGG TGCCAGGTGT GAAAACTGAT TATAAAGAGG TTGTGAACTA CACCGGGACT
GATGGCCTTT ATCAAGGTTT TGCGGCTGAA GCCAAGCTTG CTTACTATGA TCAGCGTAAC
TTCAAAGACT GGACCAACGC CATTTCGGGC GTACCATCGC TCAAAGCACA ACATCCTGAA
TATGAAAACA TGTTAGATCG AACTGAACAT GCGATGGATA ATCACTTAGA GTTTGGTTGT
ACGACTTGTC ATATGCCTAA GGCGACCAAC AAAGCCGGGG CTAAGTACTC CAATCATAAG
GTGACGTTTG ACGCTGAACA GCTGCCTGAA AGCTGCTTAA GTTGTCATGA GGGTGCTGAC
TTCGAAGAGA TATTTGATGA GCGTAAAGCT GAAATCAAAA AGCTGCGTTT TACAGCCGAT
GGCACAGATC CTCGCTTAAC TGAAGCCCAC TTTAAAGCAC AGGCAATTTG GTCTGCGAAT
GGGATTAAAG GTCTCGAAGC AGGTAAGAGC ATTGGTGAAG CTAAGGGTAA CTATGAAGCG
GCATTAAAAG CAGGTACTCC GTTAGCGGCA GAAATGGATA GTTTATTAAC TAAAATCAGA
CATGGACAGT GGTTCTGGGA CAGTGCAACA GCGTCTCACG GTATCCATGC ACATAATCCT
ACAGAAGCAG TACGTCTGCT GAAAAAGTCG AATTCGATTT TAGATGAAGC GATTGCCGAA
GCCGATCTGT TATTAACTAA GTATGCGCCT AACTATGTTT ATGATGGCAG CAAATACGAT
ACTAAAGCTA AGGTTCAACC TTTAGCGGGT CTAAATTTTG AAGCGATGAA AACCTCGAAA
GACAATTTTA TCGAGAAGCG CGTTGAAAAA GAATGGCCCG TTGATTTGAA ATAA
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| Protein sequence | MKIKKLAIAV MLSTVFTGYS MATEVDLYKS ENWKKQFPEQ YTTWAETEET TPESGKLDDF
LASNPNLVSA WAGYGFAKDY NRARGHQFAM TDIIKTLRTG HPVVGHDGKV VGEAMPANCW
SCKTPDIARM YDKVGEANFS DNSWSTWGHE MSNSIGCADC HELGSDEIRI SRPYAARAMK
SIGKDFSKQT QTMQASQTCA QCHIEYYFEG SDSKKVRYPW DHWVPGVKTD YKEVVNYTGT
DGLYQGFAAE AKLAYYDQRN FKDWTNAISG VPSLKAQHPE YENMLDRTEH AMDNHLEFGC
TTCHMPKATN KAGAKYSNHK VTFDAEQLPE SCLSCHEGAD FEEIFDERKA EIKKLRFTAD
GTDPRLTEAH FKAQAIWSAN GIKGLEAGKS IGEAKGNYEA ALKAGTPLAA EMDSLLTKIR
HGQWFWDSAT ASHGIHAHNP TEAVRLLKKS NSILDEAIAE ADLLLTKYAP NYVYDGSKYD
TKAKVQPLAG LNFEAMKTSK DNFIEKRVEK EWPVDLK
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