| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3647 |
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| Symbol | |
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| ID | 5612923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4443521 |
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| End bp | 4445563 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934600 |
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| Product | alpha/beta fold family hydrolase |
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| Protein accession | YP_001475379 |
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| Protein GI | 157376779 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3904] Predicted periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.42321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAAGG ATAAATTCCC CCTTATTGCA ACGACAATAA TTGCGACCAG TATGCTAAGT
GCTTGTGGTG GTTCTGGTTC GAAAACAGAG ACCACAGGAA CTGGTGTCAC CGACCCCATC
AAATCCTATA AGCCAATTGA GTGTAAAGCG ATGCTGTCAG CAAGCCAGTT AGCGCTGTTA
ACACCGGGCT CTGGCTGTGG CTACCTTAGC GTGCCGGAGA AACACGCCCT ATATGGTCAG
CCAGCATCAG AAAAAAACAT TGAAATAGCC GTGATAAAAC TGGCCTCAAC CTCGTCAGAA
AAGAAAGCCG ATCCGCTTGT ATACCTGCAA GGTGGTCCTG GCGGAAATGC GAGCGCGAGT
ATTGGTCAGG TGGTAACAAG TAACACCTTA ATCAAAAACA GAGATATCTA CCTGGTTGAC
CAGCGCGGCA CAGGCTATTC GAAGCCGGCA CTATTTTGCA CTGAGTATAG TGGTGAAGCA
GGTACGCCAG AACAGCTACA GGCATGTAAA GCAAGGCTGG AAAAGGCCGG CGTCGATCTT
AATGCTTATA ATAGCGTACA GAATGCTCAT GACTTTATTC AGTTGAGAAA AGCCTTATCA
ATTCCAGAGT GGAATCTGTA TGGCATCTCT TATGGAACCC GCCTCGCAAC AACCATAATG
CGAGAAAATA ATAGTGAAGG CATTCGTAGT GTTATTTTAG ATGGCATGTT CCCGATAGAG
GTGAACGGTA TCTCTGATAC GCCTTGGGCA AACTATGAAT CTTTGAATCA AATAGTCAAA
AATTGTGACA ACACAGATAG CTGTCCTGCT GATGATCTCA AAGCCGTTAT CGAAGACATT
ATTGCCCGTA TGCATAACGA GGGCATGGTG GCTGAGAGTC GCGTATTCAT CCAAAACTTA
CTCGAACTGA TCAAAGAGCC TGCGATCATC AACTACCTGT TAGCGGTTAA TGAAGATATC
GGTAAATACC GATCGGCCTT AGCATCGTTA ATGGCCGACC AAGACGATGA ACAAGATGGC
GGTGGTGAAC GAGCGGGTGA TGAAGAGAGT GATGAAGAGG AGCTATTTTA CGGCGCCATG
GGGTTATCTA CCGTCTGCGC CGAAGAGTAC CCGTTTCTTA ACACCACGGC TCTGAGTGAC
GATAATAGCC AGGGCTGGTC GGCAAGCACC CAGGTCGCAG TCAATGGCAT GTATCATATG
GGCTTCGATA AATCCTCTTG TCAGGCGTGG AATGTTGCGC CAGCCAATGA TGTTGAGACA
CAAGCTGTGG CCAGCACTCT GCCGGTGTTA ATACTCAACG GCCAAAACGA TACCCAAACA
CCGGCGGCCT GGGGATCGTT GGTGGCTAAA AACATGCTCA ATGCACAAAA CATTACCAAC
CCTCAGGGTG AACATGGGCA ACTCATGGCT GGTTTTAGCT GTTTCGATAC CATTGCGGAT
GAGTTTTTAG CTGAGCCAAA TAAAACTGTC GATGCAAGCT GTGTATCAGA GATCCCTGCA
GTAAGCTATG AAGGCGGAGG TGGCGAGGAG AAATCAGCAA GCTTTACCTT TAAGAACGGT
GATACCAGTT CAGATACCGT TTATATGAAT GGCGTTATCG GCTCAGATAC CTTAGATGTG
ATGCAGACAC TGCTTAACAG CTACCCGCAA ATTAAGACCA TAGTGATGCA AAACGTGCCG
GGATCTATGG ATGATGACAC CAACTTGTTA GCTTCTATGG AGATCAGAAA GCGTGGTATT
GCTACACATA TCCCAGCCGA TGGCATGGTA GCATCGGGCG GCACAGATAT GTTCTTAGCC
GGGGTTAAAC GCACAGCGGA AGCGGGCGCT AAGCTTGGCG TGCACTCCTG GAGCGATGGC
AGTGGCAAAG TAGCACTGGA TTACCCCCGC GATCATCAAA CACATGTTAA GTATCTGGAT
TATTATAAAG CCGTAGGGAT AGATACCAGC TTTTACTGGT ACACCCTGGA AGCCGCCCCC
GCCGATGGTA TCCACTGGAT GACAGCAGAA GAGATTGCTC AATATGGCGT ACTGACAGAG
TAA
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| Protein sequence | MIKDKFPLIA TTIIATSMLS ACGGSGSKTE TTGTGVTDPI KSYKPIECKA MLSASQLALL
TPGSGCGYLS VPEKHALYGQ PASEKNIEIA VIKLASTSSE KKADPLVYLQ GGPGGNASAS
IGQVVTSNTL IKNRDIYLVD QRGTGYSKPA LFCTEYSGEA GTPEQLQACK ARLEKAGVDL
NAYNSVQNAH DFIQLRKALS IPEWNLYGIS YGTRLATTIM RENNSEGIRS VILDGMFPIE
VNGISDTPWA NYESLNQIVK NCDNTDSCPA DDLKAVIEDI IARMHNEGMV AESRVFIQNL
LELIKEPAII NYLLAVNEDI GKYRSALASL MADQDDEQDG GGERAGDEES DEEELFYGAM
GLSTVCAEEY PFLNTTALSD DNSQGWSAST QVAVNGMYHM GFDKSSCQAW NVAPANDVET
QAVASTLPVL ILNGQNDTQT PAAWGSLVAK NMLNAQNITN PQGEHGQLMA GFSCFDTIAD
EFLAEPNKTV DASCVSEIPA VSYEGGGGEE KSASFTFKNG DTSSDTVYMN GVIGSDTLDV
MQTLLNSYPQ IKTIVMQNVP GSMDDDTNLL ASMEIRKRGI ATHIPADGMV ASGGTDMFLA
GVKRTAEAGA KLGVHSWSDG SGKVALDYPR DHQTHVKYLD YYKAVGIDTS FYWYTLEAAP
ADGIHWMTAE EIAQYGVLTE
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