| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3624 |
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| Symbol | |
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| ID | 5612225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4412293 |
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| End bp | 4413318 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934577 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475356 |
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| Protein GI | 157376756 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.112804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.505096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTAT TTTTGCTGTC GGTGATCATA ATACACTCCT TTTTCCTGCC CGGCGGGATA
TCCATATTAC TGCGGGCATT TCCCTGGTTT ATTCCACTTC TGATTATCAT CATAATGCGT
TTTCAGCTAA TCAAAAAAAC CAGTTTTAAG CAGTTAAGGT GGAAGTACTT TTATGCTTTT
CTGTTGCTGT TCGATCTTTC CTGGCTGCTG GTATTTTGGG GGCTGAGGGA TGGAATGAAC
GACAGCCTTG TTGCGATAGA AGCTATGCTT GATATCCTTA TTTTGACCTG GGCGATTGCG
CTGTTTCCTA ACAGAAATGC GATGATTGCC GCAACGGTTC CTCTTATGCT CAGTGTCTGC
GCGATAAGGT TAAATGCTTT TCCGCAATCG CCCCTGTTTC CTGTTACCAA ACTAATATGT
TTCGTCGCTA TCGTATCGAC CGGACAGAAA ATAATGGAGT CCTGGTTTAT CAAGGCGGTG
AGTCGGGATG TTGAAAAAAA GAAATTAGTA TTACAGTTCA GGCGGCTGGC ATTAGTTGAT
GGTTTGACAC AGCTGAGTAA TCGACGACAG TTCGACACCA TATTGGAGCA GGAGATCAGA
GCCGCAGAAA GAAACCATAA TCCGCTGAGC CTGATCATGA TGGATATCGA TTTTTTTAAG
CGCTTCAATG ATAGTGCCGG GCACTCAGCC GGAGATGAGT GTCTCGTTGC CGTTGCGCAG
GTACTGACAG AGACGGTTAA GCGCCCCCGG GATGTGGTGA GCCGTTACGG TGGCGAAGAG
TTTGTTATTG TACTGCCATC AACCGATCTT CAAGGCGCCG CCAGAGTTGC CGAGGCGACA
AGAAGCGCTT TAATGAGCAG GGCAATCCCT CATCCTGCTT CAGATGTCAG TCCATGTGTA
ACCATGTCTC AAGGAGTATG CCAGTGGCAA TCTGGTATGA GTTCAGAGGC ATTAATCATT
GCTGCAGATG AGCTGCTATA TCGTGCGAAG CAAGCAGGAC GAGACCAATT TAAAGTGAAT
GGCTAA
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| Protein sequence | MSLFLLSVII IHSFFLPGGI SILLRAFPWF IPLLIIIIMR FQLIKKTSFK QLRWKYFYAF
LLLFDLSWLL VFWGLRDGMN DSLVAIEAML DILILTWAIA LFPNRNAMIA ATVPLMLSVC
AIRLNAFPQS PLFPVTKLIC FVAIVSTGQK IMESWFIKAV SRDVEKKKLV LQFRRLALVD
GLTQLSNRRQ FDTILEQEIR AAERNHNPLS LIMMDIDFFK RFNDSAGHSA GDECLVAVAQ
VLTETVKRPR DVVSRYGGEE FVIVLPSTDL QGAARVAEAT RSALMSRAIP HPASDVSPCV
TMSQGVCQWQ SGMSSEALII AADELLYRAK QAGRDQFKVN G
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