Gene Ssed_3618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3618 
Symbol 
ID5611828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4405091 
End bp4406179 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content47% 
IMG OID640934571 
Producthypothetical protein 
Protein accessionYP_001475350 
Protein GI157376750 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACTT CTGTAACAAA CGGGTCTCTA ATTGGGCTCG TTCTCGCCAC TCTCTTAATC 
TCTTTGCCAT CCCACGCTGT TGAAGAATTT GACTACCAGA GCTTTTCTGA CTCATTTTCG
ATAATAGATA CCGTCGCCGG AAGGGGGAAG CATGGTGAGA AGTATCATAA CGGTTGGCAG
ACAGGCTTTG AAAACCACTC GGCTAAAAAG GCTGAACTGT CGAGACCACA TCAGGCGATA
GCGGATTCAG ATGGCAATAT ATTTATTGCC GATAAAGATG CGCATGCGAT CAGAAAAATA
GATCTCAATG GGATGATTTC AACCTATGTC GGAACCAATG AGTCTGGTTT CAACGGTGAC
AGTTTGAAAA GAACCCTGAC CCAACTTTCA TTTCCTAATG GTATCTGGCT AACGGCCAGT
GAAGCGCTTT TTATATTAGA TTCCGGCAAC GATATGATCA GAAGGGTGGA GCATGATGGG
ACTGTGACCA CCTTGTTTAA GGATGAGGAG GGAATTGAAA CCGGCCGTGG GCTATGGGTT
AGTGACGATG AGTCTGTGGT CTATTACTCT TCAGGTTCTG AGTTAAAACA GTGGCGCAGG
GGTAGGGGGA TTCGTGTTCT CGCTGATGGG TTCGATGAGC TGGCTAACCT TGCGGTGAAT
GCTAAAGGAG AGCTCTTTGT CACCGACCGG GATGCGAATC TGGTTTATAA AGTCTCGGCG
AATGGAGATA AAGAGATCGT TGCAGGCACG GGTAAACGCT CGGGGTGTGG CGATGGCTGC
CTGGCAACTG ACACCGCATT GAATCAGGTC CGGGGGATTT GGTTTCACCC TAATGGAGGT
TACTTCTTAG CGACACATAA GGGGGGACAA ATCTGGTTTG TCGATCCGGA TGGAGTCATA
CACCTATTTG TCGATGGCGG TAAAAACGAT CAGCACTTCG GTGATCGTCG AACCTACAAT
ACGCCCGGTA AGAAAATCAG CGAACCCAGA GCCATCTCAA TGGATAGTAA GGGCAATCTG
CTGATAACTG AGAGTGATTA CGGCTATATC AGAATTGTTA AGCACATTGA TAAAGCCGAG
GTTAAGTGA
 
Protein sequence
MTTSVTNGSL IGLVLATLLI SLPSHAVEEF DYQSFSDSFS IIDTVAGRGK HGEKYHNGWQ 
TGFENHSAKK AELSRPHQAI ADSDGNIFIA DKDAHAIRKI DLNGMISTYV GTNESGFNGD
SLKRTLTQLS FPNGIWLTAS EALFILDSGN DMIRRVEHDG TVTTLFKDEE GIETGRGLWV
SDDESVVYYS SGSELKQWRR GRGIRVLADG FDELANLAVN AKGELFVTDR DANLVYKVSA
NGDKEIVAGT GKRSGCGDGC LATDTALNQV RGIWFHPNGG YFLATHKGGQ IWFVDPDGVI
HLFVDGGKND QHFGDRRTYN TPGKKISEPR AISMDSKGNL LITESDYGYI RIVKHIDKAE
VK