Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3600 |
Symbol | |
ID | 5610992 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4388722 |
End bp | 4389000 |
Gene Length | 279 bp |
Protein Length | 92 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934553 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001475332 |
Protein GI | 157376732 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAGAA CCGCTGCTGC ACTGCACATA TTAGTCAAAC ATAAAGAGCT CGCCGAAGAT ATTATCAAGC AGCTGAATAA AGGCGCTAAG TTTGACGTGC TGGCCAAGAA GCACTCCACC TGCCCATCGG GTAAGAAGGG CGGTAGCTTA GGTGAATTCA AGAAGGGGCA GATGGTGCCG CCGTTCGATA AGGTCTGCTT CACCGGCGAA CTGATCACCC CACACCTTGT GAAAACAAAG TTTGGCTGGC ATGTGATTAA GATTCTATAT CGTACTTAA
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Protein sequence | MARTAAALHI LVKHKELAED IIKQLNKGAK FDVLAKKHST CPSGKKGGSL GEFKKGQMVP PFDKVCFTGE LITPHLVKTK FGWHVIKILY RT
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