Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3588 |
Symbol | |
ID | 5613523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4374670 |
End bp | 4376907 |
Gene Length | 2238 bp |
Protein Length | 745 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934541 |
Product | decaheme cytochrome c |
Protein accession | YP_001475320 |
Protein GI | 157376720 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTATAA CTAAAAGAAA AACGTCACTC GCACTATTAA TTGCATCTGC AATGATGGTC ACAGGTTGTG GTGATGATGG CAAAGATGGG CAAAACGGTG CAGATGGTTC AAATGGTGAC AATGGCGAGA ATGGTAAGCC CGGTACTTCC GGTCTTCATA TCGACATGGC CGCCGAAGCG ACTGCAAATA TTACTAACGC CGCTTATGCA GACGGTATCA TTACCGTCGA TTTCGATCTG GCAAATAAAG AGGGGGTCGG CCTATTTGGA CTGACCGGTG AGAATGAGTT CCATGATTTC CGCTTCTCAT TAGCTCAACT GCAAACTAAC ACAGGTTCTG AGCTTAAACA GTGGATGTCA CTGCTTAACG AAACGACCAA TGATGCAGGA ACGACATTCG AGCAAGGTTT TGAGAAATTA AATGATTGCC CCGAGTGTTT AGTCGATCAT GATGATGGTA CCTACACCTA TACATTCAAC ACTAATCTAA CGACCGCTGA AGACGTTGCA GGTATCGTGT TTGATGCCGG CCTGACTCAG CGTATCGCCA TTGAGATGCA GTTCGAGTAT GACTCGGGTC ATGAGCTGGC GGAAAATGCT CACTATGACT GGATCCCTTC GACCAATGCA CAAGAGGGTA TAGCGACCCG TGACCTGGTT ACATTGGAAA CCTGTTATAC CTGTCACCAG CCAGATAGCT TAAAGGCCCA CGGTGGACGT CGTCTGGACC TGGAAAACTG TCAGTCTTGT CATAATGGTG TTGTCAGCGA TCCTAATGAT GTCTCTGTTG AACTTGGACA TATGGTGCAC GCTATCCATA TGGGTCCAAA CCGTGAAGGC AAAGATGCTG AAGGTAATGT GGTTAAAATG CCATACACCA TCGCTGGTTA CGGCGGCGAT CATGCCTTCG ATTACCCTGC CTTTCCAACT AAGCCATTTA TGGACTGTGC CGCTTGTCAC GTTGAAGATG AGAACTTAGC GGATAAAGAT CTCTGGCTGG CCAATGCTAA CGCTAACGCT TGTACGGGTT GTCATACTGA CTCGCCAGCG CAGCATAAGT CGGATAAGAA CCCTGATCTG ACTTGTACTG ACTGTCACAG TGCAGCGGTT CATACAGATC ACAAGAAGCC ATATGATGCA GCACAAGACT ACAGTGTTGA AGTTAGCAAT GTTGTCTTAA ACGTTGACGG TCTACTCGAG TTTGACGTTA AGGTTATGGA CAGTGCTGGT GCACTGGTCT CTGAAGATGA GATATATAAG CAAGGCTACA GCAACCCATA CATGGTTGTG AGCTGGGATA TCGAAGATGA TTATCCTGAG CAGCTTATCT CTTCAGAAAC AGATGTTCTG ACTGTTGGAA CAACCTACGA TCATAGACGT TTCAGCTTGA AGGGTGATGG TTCAACTACC TACGATGCTA CAACTAAAGT GTTCCATGTT ACCACTGAGA AAGTGAAAGG TAGCAAGACA TATCGCACTG ATGTACCTGC AGATATCCTA ACTGACAGAT CTTTAGAAAT CCTGCCATTA GTTAAAGTCT GTTTCACAGA AGCAACTAAC GTACGTACAG ATTGTACTGC AGATGATGCA TATCCTGCAT ACGTTCAGAC TGAACCATAC CGTGTATACC AGATGGGTGC TTACGGTCCT GAGATGCGTC GCTCTATCAT CGATGAAGCT ACTTGCATGG GTTGTCATAG CCAAGAGCTA TATCATGATG CTAACGGTGT GAACTGTATC GCCTGTCATA CTAATGATAA GAAGTTGGGT GCTGTTGAAG TCGGCTATGC GCCTGTACCT TGGGGCGAAA TGAAGTCTTC AAGCTTTATG TATAAGGCAC ACAAGGCTGA AGGACATGAT AATGGCCATG GCGGTAGCGG TACTATCCTG AAAACTGACT GTATGACTTG TCATGCTGAA GTCGATGGCT GGAGTGGTAA GGACTACGGC TTCGAATTAG GCCGTAACGC TGGCTCTGCT CATACTGTAC CTAGCTTTAT CGCTAGCGAA GGTAATGACC CGGATGTTAA CCCTGTATTG TCTTGGTACG CATCTCCTGA TGCGGCTGCA TGTATGAGTT GTCATCAGAA GTACCTGTCT GATGCAGCTA TGAGCCACTT CGAGAGCAAT GGCGCATACT TTGGCCCAGA TAAGCAGATG GCTAAAGATG CTAAAGAAGC TTGTGCAACC TGTCACAGCC CAGAGAAGAT CATGGAGCAT CACGGTCATT CTCTATAA
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Protein sequence | MIITKRKTSL ALLIASAMMV TGCGDDGKDG QNGADGSNGD NGENGKPGTS GLHIDMAAEA TANITNAAYA DGIITVDFDL ANKEGVGLFG LTGENEFHDF RFSLAQLQTN TGSELKQWMS LLNETTNDAG TTFEQGFEKL NDCPECLVDH DDGTYTYTFN TNLTTAEDVA GIVFDAGLTQ RIAIEMQFEY DSGHELAENA HYDWIPSTNA QEGIATRDLV TLETCYTCHQ PDSLKAHGGR RLDLENCQSC HNGVVSDPND VSVELGHMVH AIHMGPNREG KDAEGNVVKM PYTIAGYGGD HAFDYPAFPT KPFMDCAACH VEDENLADKD LWLANANANA CTGCHTDSPA QHKSDKNPDL TCTDCHSAAV HTDHKKPYDA AQDYSVEVSN VVLNVDGLLE FDVKVMDSAG ALVSEDEIYK QGYSNPYMVV SWDIEDDYPE QLISSETDVL TVGTTYDHRR FSLKGDGSTT YDATTKVFHV TTEKVKGSKT YRTDVPADIL TDRSLEILPL VKVCFTEATN VRTDCTADDA YPAYVQTEPY RVYQMGAYGP EMRRSIIDEA TCMGCHSQEL YHDANGVNCI ACHTNDKKLG AVEVGYAPVP WGEMKSSSFM YKAHKAEGHD NGHGGSGTIL KTDCMTCHAE VDGWSGKDYG FELGRNAGSA HTVPSFIASE GNDPDVNPVL SWYASPDAAA CMSCHQKYLS DAAMSHFESN GAYFGPDKQM AKDAKEACAT CHSPEKIMEH HGHSL
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