Gene Ssed_3587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3587 
Symbol 
ID5613522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4372729 
End bp4373733 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content45% 
IMG OID640934540 
Productbasic membrane lipoprotein 
Protein accessionYP_001475319 
Protein GI157376719 
COG category[R] General function prediction only 
COG ID[COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.128703 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAA TCCTAACAAC TACTGCGACA GCTGTGTCTT TAGCACTATG CTCGTTCGTC 
GCAAACGCTG CTGATTTTAA ACCTGCCGTA GCCTATGATT CATCGGGTAA GTTTGATAAA
TCTTTCAGCC AGGCGGTTTA TCAGAACGGC GTAATTAAAT TTACCGAACA AACTAAGATT
GATGTACGTG AATTTGTACC TGCAAACGAT GCACAGCGTG AGCAAGGCCT TGAGCGTCTT
GCACGTCGTG GTTTCAACCC AATCGTTGTT GTTGGCTTCA TGTATGGTTC AGCATTAACA
AAGGTGGCTA AAAAGCACCC TGATAGTCAG TTTGTGATTA TTGATGCTGT TGTTGACCTG
CCGAATGTTA AGTCTCTTGT GTTTAAAGAG CATGAAGGTT CATTCCTTGT CGGCGCATTG
GCTGCTATGA AGTCAGAGAG CCACAAAGTG GGCTTCGTTG GTGGCATGGA TATTCCATTG
ATCCGTAAGT TTGCCTGTGG TTATGAGCAA GGTGCTAAGT ACATCAGTAA AGAGACTGAA
GTATTCCAAA ACATGACGGG TTCGACTAAC GCTGCATGGT CAGATCCTGC CCGTGGCGCC
GAGTTGACTA AGAGTCAGTT CACTAAAGGT GCCGACGTAG TCTTCGCCGC TGCCGGTGGT
ACCGGTGTTG GTGTTTATCA GGCCGCGAAA GATGAAGGCA AGTTTGCTAT CGGTGTTGAT
TCAAACCAAA ACTACCTACA TCCAGGCGTA ATGCTTACCT CTATGGTTAA GCGTGTAGGC
TTGGCGACAT TTGAAGTATT TAAGGCTGCC GAAGGTGGTA CTTTCACTCC TGGTATCGAT
GCCCGTGGTC TTAAAGAGAA TGGTGTTGGC TGGACGATCG ATGAGCATAA CCGTGATTTA
GTGACTGCCG AAATGGAAAC TAAGATCGGT GAAATTTCAG CTAAAATCGT AGCCGGAGAT
ATTAAGGTTC ACGATTACAT GGCTGATAAT AGCTGTAAGT ACTAA
 
Protein sequence
MKKILTTTAT AVSLALCSFV ANAADFKPAV AYDSSGKFDK SFSQAVYQNG VIKFTEQTKI 
DVREFVPAND AQREQGLERL ARRGFNPIVV VGFMYGSALT KVAKKHPDSQ FVIIDAVVDL
PNVKSLVFKE HEGSFLVGAL AAMKSESHKV GFVGGMDIPL IRKFACGYEQ GAKYISKETE
VFQNMTGSTN AAWSDPARGA ELTKSQFTKG ADVVFAAAGG TGVGVYQAAK DEGKFAIGVD
SNQNYLHPGV MLTSMVKRVG LATFEVFKAA EGGTFTPGID ARGLKENGVG WTIDEHNRDL
VTAEMETKIG EISAKIVAGD IKVHDYMADN SCKY