Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3587 |
Symbol | |
ID | 5613522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4372729 |
End bp | 4373733 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934540 |
Product | basic membrane lipoprotein |
Protein accession | YP_001475319 |
Protein GI | 157376719 |
COG category | [R] General function prediction only |
COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.128703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAA TCCTAACAAC TACTGCGACA GCTGTGTCTT TAGCACTATG CTCGTTCGTC GCAAACGCTG CTGATTTTAA ACCTGCCGTA GCCTATGATT CATCGGGTAA GTTTGATAAA TCTTTCAGCC AGGCGGTTTA TCAGAACGGC GTAATTAAAT TTACCGAACA AACTAAGATT GATGTACGTG AATTTGTACC TGCAAACGAT GCACAGCGTG AGCAAGGCCT TGAGCGTCTT GCACGTCGTG GTTTCAACCC AATCGTTGTT GTTGGCTTCA TGTATGGTTC AGCATTAACA AAGGTGGCTA AAAAGCACCC TGATAGTCAG TTTGTGATTA TTGATGCTGT TGTTGACCTG CCGAATGTTA AGTCTCTTGT GTTTAAAGAG CATGAAGGTT CATTCCTTGT CGGCGCATTG GCTGCTATGA AGTCAGAGAG CCACAAAGTG GGCTTCGTTG GTGGCATGGA TATTCCATTG ATCCGTAAGT TTGCCTGTGG TTATGAGCAA GGTGCTAAGT ACATCAGTAA AGAGACTGAA GTATTCCAAA ACATGACGGG TTCGACTAAC GCTGCATGGT CAGATCCTGC CCGTGGCGCC GAGTTGACTA AGAGTCAGTT CACTAAAGGT GCCGACGTAG TCTTCGCCGC TGCCGGTGGT ACCGGTGTTG GTGTTTATCA GGCCGCGAAA GATGAAGGCA AGTTTGCTAT CGGTGTTGAT TCAAACCAAA ACTACCTACA TCCAGGCGTA ATGCTTACCT CTATGGTTAA GCGTGTAGGC TTGGCGACAT TTGAAGTATT TAAGGCTGCC GAAGGTGGTA CTTTCACTCC TGGTATCGAT GCCCGTGGTC TTAAAGAGAA TGGTGTTGGC TGGACGATCG ATGAGCATAA CCGTGATTTA GTGACTGCCG AAATGGAAAC TAAGATCGGT GAAATTTCAG CTAAAATCGT AGCCGGAGAT ATTAAGGTTC ACGATTACAT GGCTGATAAT AGCTGTAAGT ACTAA
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Protein sequence | MKKILTTTAT AVSLALCSFV ANAADFKPAV AYDSSGKFDK SFSQAVYQNG VIKFTEQTKI DVREFVPAND AQREQGLERL ARRGFNPIVV VGFMYGSALT KVAKKHPDSQ FVIIDAVVDL PNVKSLVFKE HEGSFLVGAL AAMKSESHKV GFVGGMDIPL IRKFACGYEQ GAKYISKETE VFQNMTGSTN AAWSDPARGA ELTKSQFTKG ADVVFAAAGG TGVGVYQAAK DEGKFAIGVD SNQNYLHPGV MLTSMVKRVG LATFEVFKAA EGGTFTPGID ARGLKENGVG WTIDEHNRDL VTAEMETKIG EISAKIVAGD IKVHDYMADN SCKY
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