| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3578 |
|---|
| Symbol | |
|---|
| ID | 5611106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4361100 |
|---|
| End bp | 4361708 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934531 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit E |
|---|
| Protein accession | YP_001475310 |
|---|
| Protein GI | 157376710 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2209] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE |
|---|
| TIGRFAM ID | [TIGR01940] NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.881231 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACACT ACATTAATCT TTTTATTCAG GCAGCCTTCA TCGACAACAT GGCGCTGTCA
TTCTTCATGG GTATGTGTAC TTTTCTGGCG GTATCGAAGA AGGTGTCGAC CTCTTTCGGT
TTAGGTGTGG CGGTTATCGT GGTGATGACT CTGGCTGTGC CGCTTAACCA GCTAATTTAT
GCCAACGTAC TGGCTCCGGG AGCATTGGCT TGGGCGGGAA TGCCTGAGCT GGATCTGAGC
TACCTGCAGC TGATCACTTT CATCGGTGTG ATCGCGGCTC TGGTGCAGAT CTTAGAGATG
GTTTTAGACA AGTATATCCC AAGTCTGTAC GACTCTCTGG GTATATTTCT GCCGTTACTG
ACGGTGAACT GTGCCATTTT TGCCGGCGTT ATCTTCATGG CAAACCGTGA CTATAACTTA
GCTGAGTCAG CCGTATTTGC AATGGGCTCG GGTGTCGGTT GGGCGATGGC GATTGTGATG
TTGGCAGGAC TGCGCGAAAG AATGAAATTT CATGCAATAC CCGAAGGGTT ACAGGGTATT
GGTATCATCT TTATCACTAC TGGCTTGATG GCTCTGGGCT TTATGGCTTT CTCTGGTATT
TCTATTTAA
|
|---|
| Protein sequence | MEHYINLFIQ AAFIDNMALS FFMGMCTFLA VSKKVSTSFG LGVAVIVVMT LAVPLNQLIY
ANVLAPGALA WAGMPELDLS YLQLITFIGV IAALVQILEM VLDKYIPSLY DSLGIFLPLL
TVNCAIFAGV IFMANRDYNL AESAVFAMGS GVGWAMAIVM LAGLRERMKF HAIPEGLQGI
GIIFITTGLM ALGFMAFSGI SI
|
|---|
| |