Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3571 |
Symbol | |
ID | 5611614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4351012 |
End bp | 4352844 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934524 |
Product | diguanylate cyclase |
Protein accession | YP_001475303 |
Protein GI | 157376703 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTAATT TGTTCTCCAA ACGACTTAAA AGAGGTAGAA TTTTTTGCCT CTTTTTGATG CTTATTGTCC ATAACTCTTG GTCAGCACAG ATAGAGGGGA CCCAAAGCCT ATTTAACCAA GCCGAACAAA TCCGTAGTAG TGACCCAGTA CAATTCATCA CAATCATTAA AAAACTAAAA CAAAGAGAAG AACTTTTAAC TAAAGAACAA TCTCACCATC TAAAATATTT AATTGGCTAC AGCTTATCTT TCCAAGGAAA GTTTGATGAG GCATTAACGA TCTACAAAAA TATTTTAAGC TCTAATGCAC AAACGACATT AAAATTGAAA GCTAATTTAT CAATAGTAAA TACATACGCA ATATCAAAAC AATGGCCAGA AGGCCTTTAC TACCTCTCTG ACACTTTAAA TACTCTACCG AAAATCTCAG ATGATTTACT TATTCAGCGA AGTTATGCCG TTGCTGCAAT ATTTTACAAC CAACTAGGCC AGTACGAACT TGGTTTGAGT TTTGCGGACA AACTTCTACA AGAGTCTATT GAAGGTCGAA CACTCTGTAT CGCCCATAAC CTGAAATTAG AGTCACTCTT TAAACTCAAG CTCTTAGAAG AAAATGACCC GCAGATCCGG GAAGGTATCG AGGCCTGCCA ACAAAATAAC GAAGTGGTGA TGGTGAGCGC CATTTATAGC TATTTAGCGA CCCTCTATCT GCAACAAAAT AATCCTCATC AGGCAATATC CATACTCGAG TCGAATTTCG ATTCTCTGAA AACGACAAAG TATGTTCCAT ATTTAGCTAT TTTTAATTCT CTTCTATCTC AAGCGCACCA TGAGGTTGGC AGCAATGAAC AAGCAGAAGA GTATGCATTA GTTGCAATCG ATGAAGCTAA AAACATCAAT ATTAGTAACT CCTCTGTCAA TGCCTACAGG GTTCTCTACC AGATAGCCGA GTCCCGTGGC GATCATCAAA TGGCGCTGCA ATATCACAAG CAGTATGCCG AGGCGGATAA GGCCTACCTC GATGATATCA AGACCAAACA TCTGGCGTTT CAGCTGGCCC AGCATCAGGC CGCGGAGCAG AAAAGCCGTA TCGGACTGCT GGATAAACAG AATAACCTGC TCAAGATAGA GCAGAAACTG GCCAGGAGTG AGGCGGAGAA TAACCGCCTG TTTATAGCCC TGCTTATCGC GATTATCACC CTGCTCAGCT TCTGGGGCTA TAAGTCCTGG ATGACACAGA AGCGCCTTAA ACAGTTGGCC GAGTTCGACG CCCTCACGGG GGTATTTAAC CGGGGTCACT TCACTCAGCT GGCTCAGAGT GCCCTGCAGT ATTGTGAGAA CAGCGATATC TACCTTAGCT GTATCCTGTT CGACCTGGAC AAGTTTAAAA CCATCAACGA CTCCTACGGT CACGCTTGTG GGGATTGGGT GTTGAAGCGG GTGGCAGATG TTTGTAAGGT GCAGGGCAGA AGCAATGATA TCTTTGCGCG TCTGGGCGGC GAGGAGTTCT GTATCTTGCT GCCGGGCTGC GATCTGTTGA CGGCGACCAG GCTGGCCGAG ACCTGCCGCA AAGCGATAGC GCAGCTCGAT ACCTCAGATT CCGGCGCAGA GTTTATTATC ACCGCCAGCT TCGGCGTCAC AGATGCTAAG CTATCGGGCT ATGATCTCGA AAAGATCACC GCCGATGCGG ATATGGCCAT GTACCAGTCG AAACATGATG GCCGCAACCG TACCACAGTC TTCGGTCGCG CCCTTGCTAT TGATAATAGT GAAGGGAATG CTGGCGGGAA TGATGATGTG AGCGAAAACC GTCAGGGTCA CCTGACGCTT TAA
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Protein sequence | MVNLFSKRLK RGRIFCLFLM LIVHNSWSAQ IEGTQSLFNQ AEQIRSSDPV QFITIIKKLK QREELLTKEQ SHHLKYLIGY SLSFQGKFDE ALTIYKNILS SNAQTTLKLK ANLSIVNTYA ISKQWPEGLY YLSDTLNTLP KISDDLLIQR SYAVAAIFYN QLGQYELGLS FADKLLQESI EGRTLCIAHN LKLESLFKLK LLEENDPQIR EGIEACQQNN EVVMVSAIYS YLATLYLQQN NPHQAISILE SNFDSLKTTK YVPYLAIFNS LLSQAHHEVG SNEQAEEYAL VAIDEAKNIN ISNSSVNAYR VLYQIAESRG DHQMALQYHK QYAEADKAYL DDIKTKHLAF QLAQHQAAEQ KSRIGLLDKQ NNLLKIEQKL ARSEAENNRL FIALLIAIIT LLSFWGYKSW MTQKRLKQLA EFDALTGVFN RGHFTQLAQS ALQYCENSDI YLSCILFDLD KFKTINDSYG HACGDWVLKR VADVCKVQGR SNDIFARLGG EEFCILLPGC DLLTATRLAE TCRKAIAQLD TSDSGAEFII TASFGVTDAK LSGYDLEKIT ADADMAMYQS KHDGRNRTTV FGRALAIDNS EGNAGGNDDV SENRQGHLTL
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