Gene Ssed_3571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3571 
Symbol 
ID5611614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4351012 
End bp4352844 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content45% 
IMG OID640934524 
Productdiguanylate cyclase 
Protein accessionYP_001475303 
Protein GI157376703 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTAATT TGTTCTCCAA ACGACTTAAA AGAGGTAGAA TTTTTTGCCT CTTTTTGATG 
CTTATTGTCC ATAACTCTTG GTCAGCACAG ATAGAGGGGA CCCAAAGCCT ATTTAACCAA
GCCGAACAAA TCCGTAGTAG TGACCCAGTA CAATTCATCA CAATCATTAA AAAACTAAAA
CAAAGAGAAG AACTTTTAAC TAAAGAACAA TCTCACCATC TAAAATATTT AATTGGCTAC
AGCTTATCTT TCCAAGGAAA GTTTGATGAG GCATTAACGA TCTACAAAAA TATTTTAAGC
TCTAATGCAC AAACGACATT AAAATTGAAA GCTAATTTAT CAATAGTAAA TACATACGCA
ATATCAAAAC AATGGCCAGA AGGCCTTTAC TACCTCTCTG ACACTTTAAA TACTCTACCG
AAAATCTCAG ATGATTTACT TATTCAGCGA AGTTATGCCG TTGCTGCAAT ATTTTACAAC
CAACTAGGCC AGTACGAACT TGGTTTGAGT TTTGCGGACA AACTTCTACA AGAGTCTATT
GAAGGTCGAA CACTCTGTAT CGCCCATAAC CTGAAATTAG AGTCACTCTT TAAACTCAAG
CTCTTAGAAG AAAATGACCC GCAGATCCGG GAAGGTATCG AGGCCTGCCA ACAAAATAAC
GAAGTGGTGA TGGTGAGCGC CATTTATAGC TATTTAGCGA CCCTCTATCT GCAACAAAAT
AATCCTCATC AGGCAATATC CATACTCGAG TCGAATTTCG ATTCTCTGAA AACGACAAAG
TATGTTCCAT ATTTAGCTAT TTTTAATTCT CTTCTATCTC AAGCGCACCA TGAGGTTGGC
AGCAATGAAC AAGCAGAAGA GTATGCATTA GTTGCAATCG ATGAAGCTAA AAACATCAAT
ATTAGTAACT CCTCTGTCAA TGCCTACAGG GTTCTCTACC AGATAGCCGA GTCCCGTGGC
GATCATCAAA TGGCGCTGCA ATATCACAAG CAGTATGCCG AGGCGGATAA GGCCTACCTC
GATGATATCA AGACCAAACA TCTGGCGTTT CAGCTGGCCC AGCATCAGGC CGCGGAGCAG
AAAAGCCGTA TCGGACTGCT GGATAAACAG AATAACCTGC TCAAGATAGA GCAGAAACTG
GCCAGGAGTG AGGCGGAGAA TAACCGCCTG TTTATAGCCC TGCTTATCGC GATTATCACC
CTGCTCAGCT TCTGGGGCTA TAAGTCCTGG ATGACACAGA AGCGCCTTAA ACAGTTGGCC
GAGTTCGACG CCCTCACGGG GGTATTTAAC CGGGGTCACT TCACTCAGCT GGCTCAGAGT
GCCCTGCAGT ATTGTGAGAA CAGCGATATC TACCTTAGCT GTATCCTGTT CGACCTGGAC
AAGTTTAAAA CCATCAACGA CTCCTACGGT CACGCTTGTG GGGATTGGGT GTTGAAGCGG
GTGGCAGATG TTTGTAAGGT GCAGGGCAGA AGCAATGATA TCTTTGCGCG TCTGGGCGGC
GAGGAGTTCT GTATCTTGCT GCCGGGCTGC GATCTGTTGA CGGCGACCAG GCTGGCCGAG
ACCTGCCGCA AAGCGATAGC GCAGCTCGAT ACCTCAGATT CCGGCGCAGA GTTTATTATC
ACCGCCAGCT TCGGCGTCAC AGATGCTAAG CTATCGGGCT ATGATCTCGA AAAGATCACC
GCCGATGCGG ATATGGCCAT GTACCAGTCG AAACATGATG GCCGCAACCG TACCACAGTC
TTCGGTCGCG CCCTTGCTAT TGATAATAGT GAAGGGAATG CTGGCGGGAA TGATGATGTG
AGCGAAAACC GTCAGGGTCA CCTGACGCTT TAA
 
Protein sequence
MVNLFSKRLK RGRIFCLFLM LIVHNSWSAQ IEGTQSLFNQ AEQIRSSDPV QFITIIKKLK 
QREELLTKEQ SHHLKYLIGY SLSFQGKFDE ALTIYKNILS SNAQTTLKLK ANLSIVNTYA
ISKQWPEGLY YLSDTLNTLP KISDDLLIQR SYAVAAIFYN QLGQYELGLS FADKLLQESI
EGRTLCIAHN LKLESLFKLK LLEENDPQIR EGIEACQQNN EVVMVSAIYS YLATLYLQQN
NPHQAISILE SNFDSLKTTK YVPYLAIFNS LLSQAHHEVG SNEQAEEYAL VAIDEAKNIN
ISNSSVNAYR VLYQIAESRG DHQMALQYHK QYAEADKAYL DDIKTKHLAF QLAQHQAAEQ
KSRIGLLDKQ NNLLKIEQKL ARSEAENNRL FIALLIAIIT LLSFWGYKSW MTQKRLKQLA
EFDALTGVFN RGHFTQLAQS ALQYCENSDI YLSCILFDLD KFKTINDSYG HACGDWVLKR
VADVCKVQGR SNDIFARLGG EEFCILLPGC DLLTATRLAE TCRKAIAQLD TSDSGAEFII
TASFGVTDAK LSGYDLEKIT ADADMAMYQS KHDGRNRTTV FGRALAIDNS EGNAGGNDDV
SENRQGHLTL