| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3562 |
|---|
| Symbol | |
|---|
| ID | 5611719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4342763 |
|---|
| End bp | 4343458 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934515 |
|---|
| Product | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
|---|
| Protein accession | YP_001475294 |
|---|
| Protein GI | 157376694 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
|---|
| TIGRFAM ID | [TIGR03149] cytochrome c nitrite reductase, Fe-S protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCT CAAAAAGACA TTTTCTTACC GGTTGCGGCA CCTTGATCGC GGGATTCTCT
ATCTACTCGG TTGCGAAGGA GCTTGCAGAG TCAGAGGCTG GTGTCAGTGT CGACCAAACT
CAAACAATCA AATATGCCAT GGTACATGAT GAAAACCTCT GCATCGGCTG TAACGCCTGT
GAGCAGGCTT GCCGACAGGT TAACCATGTG CCCGATGGCG TCTCAAGGGT CGTGATCAAT
CGTACAGGTC CATTTGGTGA GTATCCGGAT CAGAGTTACC GTTTCAGTCG TAAGTCTTGC
CAGCATTGCG AAGATGCCCC CTGCGTAAAG GTGTGCCCTA CGGGCGCCGC CTACATAGAC
TCAGAGACCG GGATTGTCGG TGTTAATCCT GACAAGTGTG TCGGTTGCCA ATATTGCATT
GCGGCTTGTC CCTATCAGGT TAGATTTATT AATCCAGTGA CTCAAACGGC CGACAAGTGT
GATTTTTGCA GAGAGACTCA GCTTAAGCTG GGCAAACAAC CAGCTTGCGT AGAGGCGTGT
CCGACTCATG CCTTAGTGTT TGGTAATATC AGAGATCCGG AGTCTGAGTT AGTCAAAACG
TTAAAATCGA AACCGACTTA TCGAGCTAAA ACGGATTTAG GCACCCGCCC TAAGTTGTTC
CATGTATCGA CTATTGATGG GGAGATAGTG TTATGA
|
|---|
| Protein sequence | MDISKRHFLT GCGTLIAGFS IYSVAKELAE SEAGVSVDQT QTIKYAMVHD ENLCIGCNAC
EQACRQVNHV PDGVSRVVIN RTGPFGEYPD QSYRFSRKSC QHCEDAPCVK VCPTGAAYID
SETGIVGVNP DKCVGCQYCI AACPYQVRFI NPVTQTADKC DFCRETQLKL GKQPACVEAC
PTHALVFGNI RDPESELVKT LKSKPTYRAK TDLGTRPKLF HVSTIDGEIV L
|
|---|
| |