| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3556 |
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| Symbol | |
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| ID | 5611824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4335329 |
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| End bp | 4336234 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934509 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475288 |
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| Protein GI | 157376688 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAGC TTAGACACTT ACGAACATTA GTCGCCCTGA AGGAGAGTGG AAGTCTAGCT
GGCGCCGCCA AGAAACGCTT CGTCACTCAG TCGGCTCTTT CCCATCAGAT TAAGGAGCTT
GAGACCCGAA TTAACTCCTC TATTTTTGTC AGAAAGAGCA AACCTCTCTC ATTCACACAA
GAGGGAGCCA GACTGCTAAA CCTTGCCGAA GAGATCCTGC CTAAGGTGAT TGAAACTGAG
TCCGATCTTA AACAGGGGCT CAATGACGAG CATAATCAGT TAGGCGTCGG CATCGAATGT
CATAGCTGTT TTCGCTGGTT AATGCCGGTG ATGGAGGAGT TCAGAAACGC CTACCCTCAA
GCCAACTTAG ATCTCTCCAG CCGCCACCTG TTCGACTCAC TCAGTGCCCT CGAGATGGGA
GAGCTGGATG TGGTACTCAC CTCAGATCCG GTTCCCGGTC AGGCCCTTGC CTATCAGCAC
CTGTTCGATT TCGAGGTGAA ACTTGTCGTC GCTAACGATC ATCCGCTGGC CTCAAAGGAG
TATGTCACCC CTCAGCTACT GGAGAAGCAG ACCATCATCA GCTACCCGGT CCCCTTAGCG
CGTTTAGATC TGTATCGGCA CTTTCTTGAA CCCGCAGGCA TCGAAGCGGG TGAGCAGCTT
AGCTGCGATC TCACTATGAT GTTACTGCAA CGTATCGCCT GTAAAGACGG TATCGCCGCC
CTGCCGACCT GGTCAATCAG CGAGTCTTAT GGCTTAAACC TCACCGCAGT TAAGTTAGGC
CAGGAAGGGC TGAAGCGCCC ACTGTTCGGG GCCTATAGAA AAGATAGCGT TAATGCCACC
TTGGCACAGA AGTGGCTCGA ATTAGTCGCC ATCGAGGGAA TAGCGAAACA ACATAAGTTG
AATTAA
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| Protein sequence | MIELRHLRTL VALKESGSLA GAAKKRFVTQ SALSHQIKEL ETRINSSIFV RKSKPLSFTQ
EGARLLNLAE EILPKVIETE SDLKQGLNDE HNQLGVGIEC HSCFRWLMPV MEEFRNAYPQ
ANLDLSSRHL FDSLSALEMG ELDVVLTSDP VPGQALAYQH LFDFEVKLVV ANDHPLASKE
YVTPQLLEKQ TIISYPVPLA RLDLYRHFLE PAGIEAGEQL SCDLTMMLLQ RIACKDGIAA
LPTWSISESY GLNLTAVKLG QEGLKRPLFG AYRKDSVNAT LAQKWLELVA IEGIAKQHKL
N
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