Gene Ssed_3553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3553 
Symbol 
ID5611731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4329424 
End bp4331442 
Gene Length2019 bp 
Protein Length672 aa 
Translation table11 
GC content40% 
IMG OID640934506 
Producthypothetical protein 
Protein accessionYP_001475285 
Protein GI157376685 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATACTA TAATAAGATT AAGCTTTGTT TGTTTTGTAC TGCTTTCATG TATGACTCAA 
GCCAAAGAAA TTAAGTCAGG GAAATATGAG ATCAGTTTGG GACAGCCAAA TGATTGGGTC
ACAACCCAAG CACTATCCCC TAAGCAAATA AATACAGATA TGAGCCCTGT TCACTTCAGA
CTCATTGGCC GACAAGATAG GTTTACCAAT GATACCAACG AGTATTATCA GGATTTTGCT
GCTACCGCAC TGAACCAAGA GGGAGTTAAA GAGCTTTCTA AAATTGAACT CACCTTTAAT
CCTGAATTTG AAAAGCTCAC CTTACACAAG ATTGAGATTG AGCGGAAAGC CAAATGGTCA
GATAGATTAA CGAGTGCAAG AATTAACGTC ATTAACCAAG AGCAAGAACT AAGCAACGAT
CTTTTTAATG GTTTAGCCAC AGCGGTAATC GTTCTAAAAG ATGTCCGTGT GGGCGATACC
ATTCGATATC AGTACAGCAT TAAAGGACGA AATCCAGTAT ATGGACACGA GTTTGGTAGT
CACTATGCGA TGGGATGGGA AGTCAGTGTA GATAAAGTCC ATGTTAGGCT GGTCAACGCA
AGCAATAAGC CGTTTAATAT ACAAAATAAT CACAAAGCCT CTCCGACAAC CAAGCAGAGT
CAATTTGGTA AAGAGTATGA ATGGCTACTC AAAAATGTGA CTAAATACAA TTTCGAAGAA
GGCGTACCTG CTGGTCACTT GTGGGCTCCA TCGGTTTTTG TCAGCAGTAC CCGCTCATGG
TCTGAAGTGA GTAATTGGGC CATTCCCCAT TATCAATTTA AAGAATCCTC CTCTAAAGCA
CTGAATGATT TTGTCAAAGA AATCACCACA AACTATCCGA ATAAAGCAGA ACAAGTAGCA
GAGGTGATCC GCTTCGTACA ACAAGATGTC CGTTATTTCG GCATAGAAAT TGGCCAAAAC
AGCCACATAC CTCATAGCCC TAACACAGTA TTTGAACGTC GCTATGGTGA CTGTAAAGAT
AAAGCAAGCC TGCTTATAGC CTTATTAGGT GCCATAGATG TGTCTAGCTC ACCCGTGCTA
GTAAATAGTC AAATTGGTTC AACACTTAAC AAACGTGCTC CTTCTGCCAT CCTATTTGAT
CACGTAATCA ATCAACTAAC CTTCGAAGGA AAAAAGTACT TTATTGATGC AACCAATAAC
TATCAAGCCA AAGGCCTAAA GTTTATTAGC CAGCCAGACT TTGGCCATGC TTTGGTTTTA
GATAAAAATA CTAATTCACT GACACTGATG CCGTCAGGAA ACCCAGAAAT TGATAGAATA
TCTGTAGAAC AGTTATACGT TTCATCCAGC TATACAGAAC CAGTTGATCT CTATATTACG
ACACGTTATC AGGGTCATGA AGCCGATGCT ATGCGCTATC AATTATCCAG CGTATCACGA
TCTGAAATTG AGCAACACTA TCTAAACTAT TACGCTAAAT TTTACCGAGA TATAAGAGTT
GAATCGCCAG TCTTCTTGGT TGATACAACT GATGGTGGCA ATGAAATATT GATGACAGAA
CATTACAGTA TCGGAGACTT TTGGCAGGGA GATAACAATG TTTTAGATTT TGAGCTCTTT
GCCAGCTATA TCAATAATTA TGTCGAACTC CCTAAGGTGA TTAATCGAAC TCAGCCACTA
TCACTCCCAG GAATAATAGC TATTGAACAG ACATTGAAAT TGTCTATGCC AAACAATCTA
AGTTACCAAG TAAGAGAAAT GGATACTGAT ATCAGTTCTG ATGGGCTTAA TTACAATGCT
TCAGAAGCCT ATCATGATGG ACAGTTTATT AGACGTCATC GTTTCGAGAT CGATAAGAAA
ACAGTAAGTA CAGATGAGAG TCGCAACTAC ATCAATGCCT TACGTGAGAT AGATAAAGAC
CTCTACTATA CAGGCTCTAT CACAGGAGAC TTCACAAGAC CAAGTAATCC TGGTGTCGAC
TTTATCCTGC AGCAATCAAA TTCTGGGCAG GAGATATAG
 
Protein sequence
MNTIIRLSFV CFVLLSCMTQ AKEIKSGKYE ISLGQPNDWV TTQALSPKQI NTDMSPVHFR 
LIGRQDRFTN DTNEYYQDFA ATALNQEGVK ELSKIELTFN PEFEKLTLHK IEIERKAKWS
DRLTSARINV INQEQELSND LFNGLATAVI VLKDVRVGDT IRYQYSIKGR NPVYGHEFGS
HYAMGWEVSV DKVHVRLVNA SNKPFNIQNN HKASPTTKQS QFGKEYEWLL KNVTKYNFEE
GVPAGHLWAP SVFVSSTRSW SEVSNWAIPH YQFKESSSKA LNDFVKEITT NYPNKAEQVA
EVIRFVQQDV RYFGIEIGQN SHIPHSPNTV FERRYGDCKD KASLLIALLG AIDVSSSPVL
VNSQIGSTLN KRAPSAILFD HVINQLTFEG KKYFIDATNN YQAKGLKFIS QPDFGHALVL
DKNTNSLTLM PSGNPEIDRI SVEQLYVSSS YTEPVDLYIT TRYQGHEADA MRYQLSSVSR
SEIEQHYLNY YAKFYRDIRV ESPVFLVDTT DGGNEILMTE HYSIGDFWQG DNNVLDFELF
ASYINNYVEL PKVINRTQPL SLPGIIAIEQ TLKLSMPNNL SYQVREMDTD ISSDGLNYNA
SEAYHDGQFI RRHRFEIDKK TVSTDESRNY INALREIDKD LYYTGSITGD FTRPSNPGVD
FILQQSNSGQ EI