Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3553 |
Symbol | |
ID | 5611731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4329424 |
End bp | 4331442 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640934506 |
Product | hypothetical protein |
Protein accession | YP_001475285 |
Protein GI | 157376685 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATACTA TAATAAGATT AAGCTTTGTT TGTTTTGTAC TGCTTTCATG TATGACTCAA GCCAAAGAAA TTAAGTCAGG GAAATATGAG ATCAGTTTGG GACAGCCAAA TGATTGGGTC ACAACCCAAG CACTATCCCC TAAGCAAATA AATACAGATA TGAGCCCTGT TCACTTCAGA CTCATTGGCC GACAAGATAG GTTTACCAAT GATACCAACG AGTATTATCA GGATTTTGCT GCTACCGCAC TGAACCAAGA GGGAGTTAAA GAGCTTTCTA AAATTGAACT CACCTTTAAT CCTGAATTTG AAAAGCTCAC CTTACACAAG ATTGAGATTG AGCGGAAAGC CAAATGGTCA GATAGATTAA CGAGTGCAAG AATTAACGTC ATTAACCAAG AGCAAGAACT AAGCAACGAT CTTTTTAATG GTTTAGCCAC AGCGGTAATC GTTCTAAAAG ATGTCCGTGT GGGCGATACC ATTCGATATC AGTACAGCAT TAAAGGACGA AATCCAGTAT ATGGACACGA GTTTGGTAGT CACTATGCGA TGGGATGGGA AGTCAGTGTA GATAAAGTCC ATGTTAGGCT GGTCAACGCA AGCAATAAGC CGTTTAATAT ACAAAATAAT CACAAAGCCT CTCCGACAAC CAAGCAGAGT CAATTTGGTA AAGAGTATGA ATGGCTACTC AAAAATGTGA CTAAATACAA TTTCGAAGAA GGCGTACCTG CTGGTCACTT GTGGGCTCCA TCGGTTTTTG TCAGCAGTAC CCGCTCATGG TCTGAAGTGA GTAATTGGGC CATTCCCCAT TATCAATTTA AAGAATCCTC CTCTAAAGCA CTGAATGATT TTGTCAAAGA AATCACCACA AACTATCCGA ATAAAGCAGA ACAAGTAGCA GAGGTGATCC GCTTCGTACA ACAAGATGTC CGTTATTTCG GCATAGAAAT TGGCCAAAAC AGCCACATAC CTCATAGCCC TAACACAGTA TTTGAACGTC GCTATGGTGA CTGTAAAGAT AAAGCAAGCC TGCTTATAGC CTTATTAGGT GCCATAGATG TGTCTAGCTC ACCCGTGCTA GTAAATAGTC AAATTGGTTC AACACTTAAC AAACGTGCTC CTTCTGCCAT CCTATTTGAT CACGTAATCA ATCAACTAAC CTTCGAAGGA AAAAAGTACT TTATTGATGC AACCAATAAC TATCAAGCCA AAGGCCTAAA GTTTATTAGC CAGCCAGACT TTGGCCATGC TTTGGTTTTA GATAAAAATA CTAATTCACT GACACTGATG CCGTCAGGAA ACCCAGAAAT TGATAGAATA TCTGTAGAAC AGTTATACGT TTCATCCAGC TATACAGAAC CAGTTGATCT CTATATTACG ACACGTTATC AGGGTCATGA AGCCGATGCT ATGCGCTATC AATTATCCAG CGTATCACGA TCTGAAATTG AGCAACACTA TCTAAACTAT TACGCTAAAT TTTACCGAGA TATAAGAGTT GAATCGCCAG TCTTCTTGGT TGATACAACT GATGGTGGCA ATGAAATATT GATGACAGAA CATTACAGTA TCGGAGACTT TTGGCAGGGA GATAACAATG TTTTAGATTT TGAGCTCTTT GCCAGCTATA TCAATAATTA TGTCGAACTC CCTAAGGTGA TTAATCGAAC TCAGCCACTA TCACTCCCAG GAATAATAGC TATTGAACAG ACATTGAAAT TGTCTATGCC AAACAATCTA AGTTACCAAG TAAGAGAAAT GGATACTGAT ATCAGTTCTG ATGGGCTTAA TTACAATGCT TCAGAAGCCT ATCATGATGG ACAGTTTATT AGACGTCATC GTTTCGAGAT CGATAAGAAA ACAGTAAGTA CAGATGAGAG TCGCAACTAC ATCAATGCCT TACGTGAGAT AGATAAAGAC CTCTACTATA CAGGCTCTAT CACAGGAGAC TTCACAAGAC CAAGTAATCC TGGTGTCGAC TTTATCCTGC AGCAATCAAA TTCTGGGCAG GAGATATAG
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Protein sequence | MNTIIRLSFV CFVLLSCMTQ AKEIKSGKYE ISLGQPNDWV TTQALSPKQI NTDMSPVHFR LIGRQDRFTN DTNEYYQDFA ATALNQEGVK ELSKIELTFN PEFEKLTLHK IEIERKAKWS DRLTSARINV INQEQELSND LFNGLATAVI VLKDVRVGDT IRYQYSIKGR NPVYGHEFGS HYAMGWEVSV DKVHVRLVNA SNKPFNIQNN HKASPTTKQS QFGKEYEWLL KNVTKYNFEE GVPAGHLWAP SVFVSSTRSW SEVSNWAIPH YQFKESSSKA LNDFVKEITT NYPNKAEQVA EVIRFVQQDV RYFGIEIGQN SHIPHSPNTV FERRYGDCKD KASLLIALLG AIDVSSSPVL VNSQIGSTLN KRAPSAILFD HVINQLTFEG KKYFIDATNN YQAKGLKFIS QPDFGHALVL DKNTNSLTLM PSGNPEIDRI SVEQLYVSSS YTEPVDLYIT TRYQGHEADA MRYQLSSVSR SEIEQHYLNY YAKFYRDIRV ESPVFLVDTT DGGNEILMTE HYSIGDFWQG DNNVLDFELF ASYINNYVEL PKVINRTQPL SLPGIIAIEQ TLKLSMPNNL SYQVREMDTD ISSDGLNYNA SEAYHDGQFI RRHRFEIDKK TVSTDESRNY INALREIDKD LYYTGSITGD FTRPSNPGVD FILQQSNSGQ EI
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