Gene Ssed_3552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3552 
Symbol 
ID5611730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4327370 
End bp4328920 
Gene Length1551 bp 
Protein Length516 aa 
Translation table11 
GC content56% 
IMG OID640934505 
Productferredoxin-dependent glutamate synthase 
Protein accessionYP_001475284 
Protein GI157376684 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0069] Glutamate synthase domain 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATC CTATCGTTGC AGATAACAAA CCCAAGAAAG TCGAGCTCAC CAAGGGAAAA 
GAGTACTACT TCTGCGCCTG CGGCAGATCC AAGAAGCAAC CTTTTTGCGA TGGCTCCCAC
GCCGGTACCT CATTCAAACC CAAAGCCTTT ACAGCCGAAC AAGACGGCGA TGCATATCTA
TGTGCCTGCA AGCACACGGG CAACGCCCCA TTTTGTGATG GTAGCCATAA ACAGTTCACC
GCTAAACAGG TCGGCAGCGA AGGTCCCGGG CCAAACATAG CGACCAATAA GGATAGCGCC
CCCACGGCAA CGGCCACCAC CGAGGAGCCC ACGGTCGAGT TTATCCACCA GCTTGCCAGA
GATGGGTTAA CCAAACTTGG CCATCACGGC CCCATGACCT CCATGGGTGT ACCACGTCAC
CAACTGCCCC ACTGGGATGA TATTCAGATC ATGACGGCGC AGATGGCGAC TAAACCTCTG
CAGGAAGATG AAACGGTCTC CACCGAGCTG ATTATCGGGC CCCAGGCCAG AAAGCCGCTG
AAACTGAAGA TCCCGCTGTT TGTCTCCGAT ATGAGTTTCG GCGCCCTCTC TGAAGAAGCG
AAAACCGCGC TGGCGATAGG CGCCGAACTG GCAGGTACCG GGATCTGCTC GGGAGAGGGA
GGCATGCTAC CCGAAGAACA AGCCGCCAAC TCCCGATATT TTTACGAGCT CGCCAGTGCG
CAATTTGGCT ATAGGGAGGA GCTACTACAT TCGATACAGG CCTTTCACTT TAAAGGCGGA
CAAGGCGCTA AAACAGGCAC CGGAGGACAC CTTCCCGGCA TAAAAAATCA TGGCAAGATT
TCTCAGGTTA GGGGGATCCC CGAAGGAGAG CCCGCGATAT CGCCCCCCAC CTTCAGAGAG
CTGAAGAGTT CATGCGACTT TAAACGCTTC GCCGATCGGG TGCGTGAGGT CAGCGGCGGC
GTGCCCGTCG GTTTTAAACT CAGTGCTAAC CATATCGAGC GGGACATTCA GTTTGCCCTC
GATGCCACCG CCGATTACAT CATACTCGAC GGGCGTGGTG GTGGAACGGG CGCCGCCCCC
GAGATGTTCA GAGACCACAT CAGTGTCCCC ACCATTCCGG CCTTGGCCAG GGCCAGGCGT
TATCTCGATG AGCAAGGCGC TACAGGCAGA GTAACCCTGA TCGTGACCGG CGGCCTTCGA
GTGCCGATGG ACTTCGTCAA AGCCATGGCT CTGGGCGCCG ATGGTGTGGC TATCTCCAAC
AGTGCGATGC AATCTATCGG TTGCGTTGCG GCGCGCATGT GTAACACCAA CAACTGCCCC
GCAGGTATCG CCACCCAAGA TGCCGATCTA CGCCAGCGCC TTAACGTTGA GAGGTCATCA
CAACAACTGG CCAACTTCTT CAACGCCTCG ATAGAGCTGA TGCAGGTGAT GGCCAGAGCC
TGCGGACATC ATAACTTGAG TGACTTCAAC AAGAATGATC TGGCCACCTG GCACCGAGAG
ATGGCACTGT TATCCGGGAT CAACTACGCG GGATTTACAA GGTTGGATTA A
 
Protein sequence
MSNPIVADNK PKKVELTKGK EYYFCACGRS KKQPFCDGSH AGTSFKPKAF TAEQDGDAYL 
CACKHTGNAP FCDGSHKQFT AKQVGSEGPG PNIATNKDSA PTATATTEEP TVEFIHQLAR
DGLTKLGHHG PMTSMGVPRH QLPHWDDIQI MTAQMATKPL QEDETVSTEL IIGPQARKPL
KLKIPLFVSD MSFGALSEEA KTALAIGAEL AGTGICSGEG GMLPEEQAAN SRYFYELASA
QFGYREELLH SIQAFHFKGG QGAKTGTGGH LPGIKNHGKI SQVRGIPEGE PAISPPTFRE
LKSSCDFKRF ADRVREVSGG VPVGFKLSAN HIERDIQFAL DATADYIILD GRGGGTGAAP
EMFRDHISVP TIPALARARR YLDEQGATGR VTLIVTGGLR VPMDFVKAMA LGADGVAISN
SAMQSIGCVA ARMCNTNNCP AGIATQDADL RQRLNVERSS QQLANFFNAS IELMQVMARA
CGHHNLSDFN KNDLATWHRE MALLSGINYA GFTRLD