Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3552 |
Symbol | |
ID | 5611730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4327370 |
End bp | 4328920 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640934505 |
Product | ferredoxin-dependent glutamate synthase |
Protein accession | YP_001475284 |
Protein GI | 157376684 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0069] Glutamate synthase domain 2 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAATC CTATCGTTGC AGATAACAAA CCCAAGAAAG TCGAGCTCAC CAAGGGAAAA GAGTACTACT TCTGCGCCTG CGGCAGATCC AAGAAGCAAC CTTTTTGCGA TGGCTCCCAC GCCGGTACCT CATTCAAACC CAAAGCCTTT ACAGCCGAAC AAGACGGCGA TGCATATCTA TGTGCCTGCA AGCACACGGG CAACGCCCCA TTTTGTGATG GTAGCCATAA ACAGTTCACC GCTAAACAGG TCGGCAGCGA AGGTCCCGGG CCAAACATAG CGACCAATAA GGATAGCGCC CCCACGGCAA CGGCCACCAC CGAGGAGCCC ACGGTCGAGT TTATCCACCA GCTTGCCAGA GATGGGTTAA CCAAACTTGG CCATCACGGC CCCATGACCT CCATGGGTGT ACCACGTCAC CAACTGCCCC ACTGGGATGA TATTCAGATC ATGACGGCGC AGATGGCGAC TAAACCTCTG CAGGAAGATG AAACGGTCTC CACCGAGCTG ATTATCGGGC CCCAGGCCAG AAAGCCGCTG AAACTGAAGA TCCCGCTGTT TGTCTCCGAT ATGAGTTTCG GCGCCCTCTC TGAAGAAGCG AAAACCGCGC TGGCGATAGG CGCCGAACTG GCAGGTACCG GGATCTGCTC GGGAGAGGGA GGCATGCTAC CCGAAGAACA AGCCGCCAAC TCCCGATATT TTTACGAGCT CGCCAGTGCG CAATTTGGCT ATAGGGAGGA GCTACTACAT TCGATACAGG CCTTTCACTT TAAAGGCGGA CAAGGCGCTA AAACAGGCAC CGGAGGACAC CTTCCCGGCA TAAAAAATCA TGGCAAGATT TCTCAGGTTA GGGGGATCCC CGAAGGAGAG CCCGCGATAT CGCCCCCCAC CTTCAGAGAG CTGAAGAGTT CATGCGACTT TAAACGCTTC GCCGATCGGG TGCGTGAGGT CAGCGGCGGC GTGCCCGTCG GTTTTAAACT CAGTGCTAAC CATATCGAGC GGGACATTCA GTTTGCCCTC GATGCCACCG CCGATTACAT CATACTCGAC GGGCGTGGTG GTGGAACGGG CGCCGCCCCC GAGATGTTCA GAGACCACAT CAGTGTCCCC ACCATTCCGG CCTTGGCCAG GGCCAGGCGT TATCTCGATG AGCAAGGCGC TACAGGCAGA GTAACCCTGA TCGTGACCGG CGGCCTTCGA GTGCCGATGG ACTTCGTCAA AGCCATGGCT CTGGGCGCCG ATGGTGTGGC TATCTCCAAC AGTGCGATGC AATCTATCGG TTGCGTTGCG GCGCGCATGT GTAACACCAA CAACTGCCCC GCAGGTATCG CCACCCAAGA TGCCGATCTA CGCCAGCGCC TTAACGTTGA GAGGTCATCA CAACAACTGG CCAACTTCTT CAACGCCTCG ATAGAGCTGA TGCAGGTGAT GGCCAGAGCC TGCGGACATC ATAACTTGAG TGACTTCAAC AAGAATGATC TGGCCACCTG GCACCGAGAG ATGGCACTGT TATCCGGGAT CAACTACGCG GGATTTACAA GGTTGGATTA A
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Protein sequence | MSNPIVADNK PKKVELTKGK EYYFCACGRS KKQPFCDGSH AGTSFKPKAF TAEQDGDAYL CACKHTGNAP FCDGSHKQFT AKQVGSEGPG PNIATNKDSA PTATATTEEP TVEFIHQLAR DGLTKLGHHG PMTSMGVPRH QLPHWDDIQI MTAQMATKPL QEDETVSTEL IIGPQARKPL KLKIPLFVSD MSFGALSEEA KTALAIGAEL AGTGICSGEG GMLPEEQAAN SRYFYELASA QFGYREELLH SIQAFHFKGG QGAKTGTGGH LPGIKNHGKI SQVRGIPEGE PAISPPTFRE LKSSCDFKRF ADRVREVSGG VPVGFKLSAN HIERDIQFAL DATADYIILD GRGGGTGAAP EMFRDHISVP TIPALARARR YLDEQGATGR VTLIVTGGLR VPMDFVKAMA LGADGVAISN SAMQSIGCVA ARMCNTNNCP AGIATQDADL RQRLNVERSS QQLANFFNAS IELMQVMARA CGHHNLSDFN KNDLATWHRE MALLSGINYA GFTRLD
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