| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3545 |
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| Symbol | |
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| ID | 5611927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4320143 |
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| End bp | 4321531 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934498 |
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| Product | D-amino acid dehydrogenase |
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| Protein accession | YP_001475277 |
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| Protein GI | 157376677 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC CAGAAACTAA TCGAAATAAA AACAAAGAGG TGGCTGTAAT AGGCGGCGGA
ATTATCGGAC TCTGTAGCGC TTATTACCTA CACAAGGCTG GTAGGTCGGT GGTAGTCGTA
GATAAAGGAG AGATTGGTAA GGCCTGCTCT TTCGGTAATG CCGGCTATAT CACGCCCAGT
CACTTCGTTC CGCTGGCAGC GCCGGGTATG ATACAAAAAG GCTTAAAGTG GATGTTAAAT
CCTCAGAGTC CCTTCTTCGT TCGCCCGAGT CTCAATCTCG ACTTTTTACT CTGGCTCTGG
TCCTTCGCTA AAAAATGCAC CAAGCAACAC ACCTTAAATA CCCAAGAGGC CATCCTAGAT
ATCAACCTTA AGTCTTTAGC CCTCTACGAA GAGCTCCACA ATGAAGAGGA CCTTGAATTT
CAGTTTTATC AGAAAGGCCT GTTAATGCTC TATAAGACAG AGAAAGAGTT GAAGGAGGAG
GCCGAAACCG TCAAACAGGC TAACAGACTG GGCCTAAATG CAAAGATGCT CAGCCCAAGT
GAGCTTAAAT GTCTGGAGCC CAATATCGAT TTCGATGTCA TAGGTGCGGC TCATTATCCG
GAAGATGCAC ACATCGCCCC CTATGAGCTA CTCAATAGCT TAAGAGTCTA TCTCGAGACT
CGGGGGGTCG AATTTATTGA GCACGCAGAG ATCACATCCT TCAATACCGA CTCGCTAACT
AGCCCCTCTG GAGATAACAC AGCTGACAAA AACAGACCGC GAAAACTTGT CTCGGCGGGC
TATACCAAGG GCTCTGAAAA GGGGAACATC GAAGCCGATG AGTTTATTCT TGCCAATGGT
GCCTGGTCGG GTCAAACGGC CGCAAGCTTA GGGTTGAAGA TCCCCGTTCA GGCGGGGAAA
GGGATCAGCA TCACCTTAAG TAACGACCCG GACAATAAGT GCGCGCCCGC CACTTTTGAC
TGTAGAACCC CTTTTATCCT GAGTGAAGCT AAAGTTGCCG TCACGCCATT TAACAATGAG
ATCCGCTTCG GCGGCACGAT GGAGCTGGGT GTACTGGCCA ATCAGGAGCG AAGAGGGATC
AGCCAAAACA GGATTAAGGG GCTGCTAAAA TCGGCCGGTC GTTACCTGCC CGCATTCAGG
GCTGACAGTA TCGATCAGAG TCTGTTCTGG TCCGGCTTCA GGCCCTGCTC TCCCGATGGG
TTACCTATCA TAGGTCGCTG TCACCCATAC ACGAACCTGA CGGTATCTAC GGGGCATGCC
ATGATGGGGC TGAGCCTGGG GCCTATCTCC GGCAAACTGG TGAGTGAAAT AATCACAGGC
TCAAAAACCA GCGTCAACCT CGGCCCTTTC GATCCCAATA GATTTCACAG CGAAGGCAAA
ATAGCTTAG
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| Protein sequence | MMNPETNRNK NKEVAVIGGG IIGLCSAYYL HKAGRSVVVV DKGEIGKACS FGNAGYITPS
HFVPLAAPGM IQKGLKWMLN PQSPFFVRPS LNLDFLLWLW SFAKKCTKQH TLNTQEAILD
INLKSLALYE ELHNEEDLEF QFYQKGLLML YKTEKELKEE AETVKQANRL GLNAKMLSPS
ELKCLEPNID FDVIGAAHYP EDAHIAPYEL LNSLRVYLET RGVEFIEHAE ITSFNTDSLT
SPSGDNTADK NRPRKLVSAG YTKGSEKGNI EADEFILANG AWSGQTAASL GLKIPVQAGK
GISITLSNDP DNKCAPATFD CRTPFILSEA KVAVTPFNNE IRFGGTMELG VLANQERRGI
SQNRIKGLLK SAGRYLPAFR ADSIDQSLFW SGFRPCSPDG LPIIGRCHPY TNLTVSTGHA
MMGLSLGPIS GKLVSEIITG SKTSVNLGPF DPNRFHSEGK IA
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