Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3542 |
Symbol | |
ID | 5611952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4316856 |
End bp | 4318547 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640934495 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001475274 |
Protein GI | 157376674 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATA CTAACGAATT TGATATCTGC ATCGTAGGCA GTGGCGTCGG TGCCGGTCCT GTGGCCCATG AACTGGCCAA GGCGGGTTAC AGGGTTGGTG TGCTCGAGAA GGGGAAGTGG TTTAAAGAAA CGGACTTCTT CAAAGATGAG CAGCTTGGAC GTCATAGGGT ATTTAGATCT CAATTCAAGG ATGAGCGGCA CACCTTAGAG GAGCCCAACG GTGACGGCAC CTGGTCGAGT GAGACTACCG CGCAGTTTTG GGGCGGCAAT ATTGTCGGTG GTGCCTCTAA CTTTATGAGT GGTTACTTTC ATCGACTCAA GCCACAGGAT TTCCGGTTAG TCAGTGAGTT TGGTGAAATA GAAGGGGCCA ATACCGTCGA CTGGCCAATC GGCTATGACG AGTTAGAGCC CTATTACACT AAGGTTGAGC AGCTTGTAGG GGTGTCGGGC AAGGTGGTTG AGCATCCTCA CCTGGAGCCG CGTTCGACCA AAGATTTCCC CTTTCCTCCC ACCGCGGAGC ATCCGGTCGC TCAACGGTTC GATTTAGCCT GCAGAGCACT TAAACTCCAC CCACTTCCCA TGGCGAGAGG CATCTTGTCG GTGCCCTTTA ATGGGCGTTT GAGCTGTGAG TATTCCGGCT ATTGTGGCAG TTATGGCTGT CACTCAGGCG CCAAAGCCAG CTCCCGTGCG GCCTTGTTGG ATAACGCCGT TGCAGGCGGC AATTGTGAGG TTATCACACA AGCCAAAGTG TATCGGCTCA ATACTGATGA AGCCGGAAGG GTGAGCTCTG CTGACTACTT CGACAAAGAC GGAGAATCAG TACGGGTCCT GGCCACCATT TTCGTGGTGG CCTGTTACTC CATTGAGAGC GCACGTTTAT TGTTAAGCAG TACCGGAGTT AAGCACCCAC AAGGCATAGG AAACAGCAAG GGACAGGTAG GTAAGAACCT GCACTGCTGC GCGGGTGGAA CGGGTCATGG GGTGTTTAAA CTCGATAAGC TAAAAGAGTT TGAAGCCAGG CAGCTCAAGA TCCGGGGACC GTTTTATAAT CGCGCCTTGC AGGATTGGTA TGTGATCGAT GACAGGTCCG TCTCTGACAA GCCGATAAAG GGCGGCACTT TAGATTTTGT GTTCGATCCG CCATCACCTA CAGCGGAGAC GGCAGGGCTC AAGTGGCAGG GGGATAATCT GCTGTGGGGC ACGCCCCTAA AGCAGAAGAT TAAGGCGCAC TTTACCCAAT CGAAAGACTT TAAGTTTGAG GTGTTTTGTG ACTGGCTAAC TAATGACGAG TGTTATGTCA GCTTAGACCC TGATGAGAAA GACAGGTGGG GCCAGGCTGT CGCGAAGGTG CGCGCAGGGT TTCACCCCCA TGATGAGAAG GTCGCTCAAT ACCTGGTCGA TCGCGGAGTC GAGGTGATGA AAGCCATGGG CGCAGACGAG GCCTGGGGCA ATGTGTTTAC CTCACCGACA TCCAACCTGG TCGCCGGAGG CTGCCGTTTC GGTAATGACC CTGACACCTC GGTGCTGGAC AGAAACTGCC GGGTACACGA CTGCGATAAT CTCTATGTCA CCGATGGAAG TTTTATGCCT AATGGTGGTT CAGTCACACC GACACTGACT ATCTATGCCA ACGCGTTTCG GGTTGCGGAC AGGATACTGG AGGAGATGAA GGTGCTAGAA CCTAGAACCT AG
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Protein sequence | MKNTNEFDIC IVGSGVGAGP VAHELAKAGY RVGVLEKGKW FKETDFFKDE QLGRHRVFRS QFKDERHTLE EPNGDGTWSS ETTAQFWGGN IVGGASNFMS GYFHRLKPQD FRLVSEFGEI EGANTVDWPI GYDELEPYYT KVEQLVGVSG KVVEHPHLEP RSTKDFPFPP TAEHPVAQRF DLACRALKLH PLPMARGILS VPFNGRLSCE YSGYCGSYGC HSGAKASSRA ALLDNAVAGG NCEVITQAKV YRLNTDEAGR VSSADYFDKD GESVRVLATI FVVACYSIES ARLLLSSTGV KHPQGIGNSK GQVGKNLHCC AGGTGHGVFK LDKLKEFEAR QLKIRGPFYN RALQDWYVID DRSVSDKPIK GGTLDFVFDP PSPTAETAGL KWQGDNLLWG TPLKQKIKAH FTQSKDFKFE VFCDWLTNDE CYVSLDPDEK DRWGQAVAKV RAGFHPHDEK VAQYLVDRGV EVMKAMGADE AWGNVFTSPT SNLVAGGCRF GNDPDTSVLD RNCRVHDCDN LYVTDGSFMP NGGSVTPTLT IYANAFRVAD RILEEMKVLE PRT
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