Gene Ssed_3534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3534 
Symbol 
ID5612064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4306272 
End bp4307006 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content48% 
IMG OID640934487 
Product3-oxoacyl-(acyl carrier protein) reductase 
Protein accessionYP_001475266 
Protein GI157376666 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGCTA ACAAAGTTTG TATTGTAACA GGCGGGGCGC AGGGAATTGG GCGTTGTATC 
GTTGAAACAT TTGCGAAGCA GGGAGCATTA AAAGTCTATG CCTGCGATAT GAATCATGAA
GCGATGGTAG ATCTGGAAAC TCAGTACAGT AATGTTTGTG CTAAACAGCT TAATGTTTGC
GATAGGGATG CTATCAAGAT GCTGGTGGCA GAATTGAAAG AGGTACATGG CAATATCGAT
GTCTTGGTTA ACAATGCCGG TATCACACGG GATAATCTTC TGGACAGGAT GAGTGAAGAT
GACTGGGATA TGGTGGTCAA TGTCAACTTG AAGGGCGTCT TCAATATGAC TCAGGCGGTT
TCACCTGTGA TGATTGAAAG TGGTGTCGGT TCAATCATAA CCATGTCATC GGTCGTCGGT
ACCGACGGCA ACGTTGGTCA GAGTAACTAT GCCGCGACTA AAGGCGGTGT GATCACTATG
ACTAAGGGCT GGGCAAAAGA GTTTGCTCGT AAAGGTGCTC AGGTTCGCGC GAACTGCGTC
GCGCCCGGCT TTATCGAAAC CCCAATGACC ATTGAACTTC CGGAAAAAGT ACTCGATTAC
ATGAAAGGGA AGACACCACT GGGGCGTATG GGTAAGCCTC AGGATATCGC CGATGGCGTG
CTGTTCCTCG CCAGCGATCA GGCCAGTTTT ATTACCGGAC AAACACTAAA AATTGATGGC
GGCTTAGTGA TCTAG
 
Protein sequence
MLANKVCIVT GGAQGIGRCI VETFAKQGAL KVYACDMNHE AMVDLETQYS NVCAKQLNVC 
DRDAIKMLVA ELKEVHGNID VLVNNAGITR DNLLDRMSED DWDMVVNVNL KGVFNMTQAV
SPVMIESGVG SIITMSSVVG TDGNVGQSNY AATKGGVITM TKGWAKEFAR KGAQVRANCV
APGFIETPMT IELPEKVLDY MKGKTPLGRM GKPQDIADGV LFLASDQASF ITGQTLKIDG
GLVI