| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3534 |
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| Symbol | |
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| ID | 5612064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4306272 |
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| End bp | 4307006 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934487 |
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| Product | 3-oxoacyl-(acyl carrier protein) reductase |
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| Protein accession | YP_001475266 |
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| Protein GI | 157376666 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCTA ACAAAGTTTG TATTGTAACA GGCGGGGCGC AGGGAATTGG GCGTTGTATC
GTTGAAACAT TTGCGAAGCA GGGAGCATTA AAAGTCTATG CCTGCGATAT GAATCATGAA
GCGATGGTAG ATCTGGAAAC TCAGTACAGT AATGTTTGTG CTAAACAGCT TAATGTTTGC
GATAGGGATG CTATCAAGAT GCTGGTGGCA GAATTGAAAG AGGTACATGG CAATATCGAT
GTCTTGGTTA ACAATGCCGG TATCACACGG GATAATCTTC TGGACAGGAT GAGTGAAGAT
GACTGGGATA TGGTGGTCAA TGTCAACTTG AAGGGCGTCT TCAATATGAC TCAGGCGGTT
TCACCTGTGA TGATTGAAAG TGGTGTCGGT TCAATCATAA CCATGTCATC GGTCGTCGGT
ACCGACGGCA ACGTTGGTCA GAGTAACTAT GCCGCGACTA AAGGCGGTGT GATCACTATG
ACTAAGGGCT GGGCAAAAGA GTTTGCTCGT AAAGGTGCTC AGGTTCGCGC GAACTGCGTC
GCGCCCGGCT TTATCGAAAC CCCAATGACC ATTGAACTTC CGGAAAAAGT ACTCGATTAC
ATGAAAGGGA AGACACCACT GGGGCGTATG GGTAAGCCTC AGGATATCGC CGATGGCGTG
CTGTTCCTCG CCAGCGATCA GGCCAGTTTT ATTACCGGAC AAACACTAAA AATTGATGGC
GGCTTAGTGA TCTAG
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| Protein sequence | MLANKVCIVT GGAQGIGRCI VETFAKQGAL KVYACDMNHE AMVDLETQYS NVCAKQLNVC
DRDAIKMLVA ELKEVHGNID VLVNNAGITR DNLLDRMSED DWDMVVNVNL KGVFNMTQAV
SPVMIESGVG SIITMSSVVG TDGNVGQSNY AATKGGVITM TKGWAKEFAR KGAQVRANCV
APGFIETPMT IELPEKVLDY MKGKTPLGRM GKPQDIADGV LFLASDQASF ITGQTLKIDG
GLVI
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