| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3525 |
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| Symbol | |
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| ID | 5612105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4293866 |
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| End bp | 4295326 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934478 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001475257 |
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| Protein GI | 157376657 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2271] Sugar phosphate permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAAGCA TTAATAATAA GAACAGTGAT AGAACCCTTA GCAAAGGTGA TGCAGGCTTA
GCTTGTTCTC ATATTGGTGC TGTAAAAAGT GCTGTAAAGA GCCCCGCTAA CGCTTCAAGT
AGCAGTGGAA TTTTACCTAA CGGGATAGTA TTTTATGGCT GGTGGATAGT CTTAACCTCA
GTAATCGGTC TATCTCTTGG TTACAGCGTC ATTGCCATGT CTTTCGGCAC GTTTATCAAG
GAGTTTGAAG AGACCTTTGG TTGGACACGA GGTCAGATAT CTTTCGGTTC CACCGTAATA
GGTATCACAG CGATCCTTTT CTTCCCCTAT GCCGGTATGT TGGTCGATAG ATACGGGGTT
AAAAATATCT TGTTGCCATC TACCTTTCTT TTCGGCCTGG TCATGGCCTC GATGTCACTG
CTTACTCCAT CGATATGGCA CTTTTATGCC ATGTGTATTT TTATTCCACT TCTTGGTGCC
GGGACTGCCC CATTGACTTA TTCCCGCCTG CTTGTGAGCT GGTTCGATAA ACAACGTGGG
CTTGCTTTGG GCATAGGATT AAGCGGTGTG GGATTGGGGA CGGCTATTGT GCCGCTGATC
GCATCGTATT TTATTGAACA CTACAGCTGG CGCCAGGCTT ATCTTGCTAT CGGCGGCTTG
ATCATTTTGT TGGTGTGGCC GATGGCTAAG TTTGTGTTAG CCGATAAACC CAATGAAAAG
GGGTTGGTCG CCGATGGTAT GGCATTGAGC GATGATGAAG CGAGTGCCAA GCTTCAAGCG
CGAGTCGAAC AGATAGATAT CAAGGTTGGT TATACCGCTA AAGAAGCGGT GAAGAGCAAG
GCTTTTTGGC TGATGCTAAG CTCGTTTTTT ATCACGGGGT TAACCACCTC GACCCTGCTG
GTTCACCTCG TTCCTATGAT GATGGATAGA GGGGCTAGCC TGCAAGAAGC CGTGGAGACG
TTTGCTTATT TGGGAATCTC TGTTGTCGGT GGGCGGTTAA TTGCGGGTTA CTTGATGGAC
AAATTCTTCG CGCCCTATGT GGTGGCGATC TTCATGCTAG GACCTATTCT GGGGTTGGCG
GCCTTTTCGA TGGGAGCTAC CGGAGATATG GCGGCAATCT CAATAGGTCT CATAGGTATT
GCTATCGGTG CTGAGTTCGA TGCCATAGCT TATTTCACCA CTCAGTATTT CGGAAAACGA
TCTTTCGGGG TTATCTATGG TTATGGTTAT TCAGGTTTTA AATTAGGTGC CAGTATTGGC
CCACTCATCA TGGGCTTAAC CTATGACCGT TTAGGTCGCT ACACCGAGGT GTTATGGGCC
ATGTCGGCCA CTATGGCACT GGGTTGCGTA CTCATTTTAT GCATGGGGGC ATATCCATCG
CTTCCGGTAA GAGAGATTTC TTCAAAGCTG GGTCAAAAAA GCTCTTTGGG CAAAAGAAAA
GTGCTAAGCA GTAAATCATA A
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| Protein sequence | MKSINNKNSD RTLSKGDAGL ACSHIGAVKS AVKSPANASS SSGILPNGIV FYGWWIVLTS
VIGLSLGYSV IAMSFGTFIK EFEETFGWTR GQISFGSTVI GITAILFFPY AGMLVDRYGV
KNILLPSTFL FGLVMASMSL LTPSIWHFYA MCIFIPLLGA GTAPLTYSRL LVSWFDKQRG
LALGIGLSGV GLGTAIVPLI ASYFIEHYSW RQAYLAIGGL IILLVWPMAK FVLADKPNEK
GLVADGMALS DDEASAKLQA RVEQIDIKVG YTAKEAVKSK AFWLMLSSFF ITGLTTSTLL
VHLVPMMMDR GASLQEAVET FAYLGISVVG GRLIAGYLMD KFFAPYVVAI FMLGPILGLA
AFSMGATGDM AAISIGLIGI AIGAEFDAIA YFTTQYFGKR SFGVIYGYGY SGFKLGASIG
PLIMGLTYDR LGRYTEVLWA MSATMALGCV LILCMGAYPS LPVREISSKL GQKSSLGKRK
VLSSKS
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