| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3518 |
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| Symbol | |
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| ID | 5612351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4285304 |
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| End bp | 4286992 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934471 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_001475250 |
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| Protein GI | 157376650 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATC ACAAACGCCC GCTCTACCTT CCATTCGCAG GTCCAGCTAT TCTCGAAGCC
CCTTTGATCA ACAAGGGCAG CGCATTCACC GATGAAGAAC GAGTTTTTTT CAACCTGGAA
GGCCTGCTTC CCCATGTGAT TGAAACCATC GAGGAGCAAG CCTCTCGAGC CTATGACCAA
TACACTAATT TCACCAACGA TCTCGACAAA CATATCTATC TGAGAAATAT CCAGGACACC
AACGAGACTC TCTACTATCG TCTGGTTCAG AATCATATCA CCGAGATGAT GCCGATCATC
TATACCCCTA CTGTGGGTAT GGCCTGTGAG CGTTTCTCAA AAAACTATCG TCGTAACCGT
GGCCTGTTTA TCTCCTACCC AAATAAAGAT CGCATCGATG ATCTGTTAAA TAACTCCACC
CGTCAGAAAG TAAAAATTAT TGTGGTGACC GACGGTGAGC GTATTCTGGG TCTGGGAGAC
CAAGGTATCG GTGGTATGGG GATCCCCATT GGTAAGCTAT CACTCTACAC CAGCTGTGGC
GGCATCAGCC CCGCCTATAC CCTACCCATC ACTCTCGATG TCGGTACCGA CAACCCTAAT
CTGCTCGAAG ATCCGATGTA CATGGGCTGG CGCCATCAAC GTATTGGCGG CGAAGAGTAT
ACCGAATTTG TCGAAGCCTT TATGCAAGCG GTACATCGCC GCTGGCCCGA CGCATTAATT
CAATTTGAAG ATTTTGCGCA AAAAAATGCG ATGCCACTGC TCGAGCGATA TAAAGATCAA
TATTGCTGCT TCAATGATGA TGTTCAAGGC ACGGCTGCAG TAACTGTCGG TTCATTATTG
GCGGCCTGTA AAGCGGCAAA AACCAAGCTA AGTGAGCAAC GCGTCACCTT CCTCGGCGCA
GGTTCTGCCG GTTGTGGTAT CGCCGAAGCC ATTGTGGCAC AAATGATCGC TGAAGGGCTC
AGCGAGGAGC AGGCACGCGC ACAGGTCTTC ATGGTCGACC GTTGGGGCTT ACTACAAGAT
AATATGCCTA CCCTGTTGCC ATTCCAGCAA AAGCTGGCGC AGAAATGTGA TGATATCGAA
GGCTGGGATA ATTTCAGTGA AAATATCTCA TTGCTGGATG TCGTCAACAA CGCTAAACCA
ACCGTATTAA TTGGCGTTTC CGGTGCCCCC GGTGTATTCA GTGAGGAGAT AATCAAGGCG
ATGCATAGTC ATTGTCCTCG TCCAATCGTC TTCCCGCTAT CTAACCCAAC GAGCCGCGTC
GAAGCCACAC CGAAAGATCT CCTGCACTGG ACTAAGGGTC AGGCACTCGT TGCAACGGGT
AGCCCATTCG AGCCAGTAGT CGTGGAAGAT GAAACCTTTG AAATTGCCCA GTGTAATAAC
AGCTATATCT TCCCGGGCAT AGGCCTGGGA GTCTTAGCCG CCGGAGCCAA ACGGGTCAGC
AATGAGATGC TGATGGCATC GAGTCGTGCG TTAGCCGAGT GTTCACCACT TGCACTCGAT
GGCGAAGGCC CACTGCTACC ACCGCTGGAA GAGATCCACA AGGTCAGTAA GCATATCGCC
CTTGCCGTAG GTAAGGTTGC CATCGAGCAA GGACACGCCC TCCCCTGTAC CGATGAGCTA
CTCGAGCAGT CTATCGAAGA TAACTTCTGG ACCGCAGAGT ATCGACGTTA CAAGAGAACG
TCGTTCTAA
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| Protein sequence | MDDHKRPLYL PFAGPAILEA PLINKGSAFT DEERVFFNLE GLLPHVIETI EEQASRAYDQ
YTNFTNDLDK HIYLRNIQDT NETLYYRLVQ NHITEMMPII YTPTVGMACE RFSKNYRRNR
GLFISYPNKD RIDDLLNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG
GISPAYTLPI TLDVGTDNPN LLEDPMYMGW RHQRIGGEEY TEFVEAFMQA VHRRWPDALI
QFEDFAQKNA MPLLERYKDQ YCCFNDDVQG TAAVTVGSLL AACKAAKTKL SEQRVTFLGA
GSAGCGIAEA IVAQMIAEGL SEEQARAQVF MVDRWGLLQD NMPTLLPFQQ KLAQKCDDIE
GWDNFSENIS LLDVVNNAKP TVLIGVSGAP GVFSEEIIKA MHSHCPRPIV FPLSNPTSRV
EATPKDLLHW TKGQALVATG SPFEPVVVED ETFEIAQCNN SYIFPGIGLG VLAAGAKRVS
NEMLMASSRA LAECSPLALD GEGPLLPPLE EIHKVSKHIA LAVGKVAIEQ GHALPCTDEL
LEQSIEDNFW TAEYRRYKRT SF
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