| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3507 |
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| Symbol | |
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| ID | 5612606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4273897 |
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| End bp | 4274667 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934460 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001475239 |
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| Protein GI | 157376639 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0107621 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAAGCA AAACTTTGCC CTTTGTGAGC TTGGGCTTCA TAATGTCGCC AATTCTGTAT
TCAAAGCTGA GATCTATTGT GCGTCTAGAC AAATTTATCT GCGAATCGAC TTCGCTAACC
CGTTCTTTAG CGAAGAAGGC CATGCATAGA GGCGATGTCA CTTGCGATGG TGAAATCATT
AAGAACTCTG GCTTTAAAGT GACTGATGCA CATACCATCT GTCTCGATGG CGAGGTGCTA
TCGATCATCG GGCCTCGTTT TATCATGATC AATAAACCCG TCGATACCAT CTGTTCGACC
ATAGATGAAG AGTACCCATC TGTGTTGGGA TTAATTGATG TCATTAAACC TGAAGAGTTG
CATATTGCCG GGCGTCTGGA TGCGGACACC ACAGGGCTAG TGCTGATAAC TAATGATGGT
CAGTGGTCCC ATAAAATCAC CTCTCCTAAG AAAGAGTGCG GTAAGCGTTA CTTGTTGGAA
ACGGCTGAGC CATTGGCTGA TTCATTGGTT GAGCAATTTG CAACTGGGTT GCAGCTCAAT
AATGAAGACG GCCTGACTAA ACCGGCTATA TTGGATATCT TAGGTGCTCA TGAGGCAAGA
TTAACTATCA CTGAAGGTAA ATATCATCAG GTTAAGCGCA TGCTCGCCGC GGTGGGGAAT
AGAGTCACCC GCTTACATAG AGAATGCGTT GGCACGATAG AGTTAGATGC AGATCTTGAT
TTGGGTGAGT GGCGTTACCT TACCGACGAA GAGATTAAGT CGGTTAAGTA A
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| Protein sequence | MPSKTLPFVS LGFIMSPILY SKLRSIVRLD KFICESTSLT RSLAKKAMHR GDVTCDGEII
KNSGFKVTDA HTICLDGEVL SIIGPRFIMI NKPVDTICST IDEEYPSVLG LIDVIKPEEL
HIAGRLDADT TGLVLITNDG QWSHKITSPK KECGKRYLLE TAEPLADSLV EQFATGLQLN
NEDGLTKPAI LDILGAHEAR LTITEGKYHQ VKRMLAAVGN RVTRLHRECV GTIELDADLD
LGEWRYLTDE EIKSVK
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