| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3504 |
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| Symbol | |
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| ID | 5612610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4271814 |
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| End bp | 4272350 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934457 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001475236 |
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| Protein GI | 157376636 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.674395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.884128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATGCAC AGATAGAGTT CATTGCAAAC CAAGAGGTTT CAGAACTAGA GCTGATTGAG
AAAGCCAAGC AAGGAGATAA AACCGCTTTC AAGCAGATCT ATTTGCGTCA TCACAAAAGA
GTGTATGGCC TTTGCTTCAG ACTCTCCGGA CAAGCTTATT TGGCAGAAGA AGCGACACAG
GAAACCTTTG TTCGCTTGTG GCAAAAGTTG CCTCAGTTTC GGGGAGAGAG TCAATTTACG
ACTTGGCTAC ATAGCATGAC GGTCAACCAG ACATTGAGCA GTATTCAGAA ACATAAAAGC
TTTTGGGCCC GTTTCACTCC CATGAGTGAA CATACCGAAG CGAGCGGTGA CAAACTGGAA
TATGAGAACT TTGACAAGCT ATTACTCAAG CTTCCCGAAC GGGCGCGTAT TGTATTTATA
CTGTTCTCGA TTGAAGGCTA TAAACACGAT GAAATCGCCG GTCTGTTGGG CATTGCCTCC
GGCACGAGTA AAGCACAGTA CCACAGAGCC AGGAAGCTAC TACAGGAGAT GCTGTAA
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| Protein sequence | MNAQIEFIAN QEVSELELIE KAKQGDKTAF KQIYLRHHKR VYGLCFRLSG QAYLAEEATQ
ETFVRLWQKL PQFRGESQFT TWLHSMTVNQ TLSSIQKHKS FWARFTPMSE HTEASGDKLE
YENFDKLLLK LPERARIVFI LFSIEGYKHD EIAGLLGIAS GTSKAQYHRA RKLLQEML
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