| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3503 |
|---|
| Symbol | |
|---|
| ID | 5612609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4270622 |
|---|
| End bp | 4271578 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934456 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_001475235 |
|---|
| Protein GI | 157376635 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.599895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGTCA TTGATGCAGA ACAAATTCAC CAAACACTTA ACTTCCCGAA ACTGATTAGT
GCGCTTAAAG AGACGTTCTC TAAGCCAGCA GGCATGCCTC AACGACAAGT ATTCAGCCTA
GATGAATCCT CATCCCACAG CGATGCCTTT GCCGTGTTGC CCTCATGGAA TGAGCAAACG
ATCGCGGTTA AAGCCTTTAC CTACTTTCCA AATAATCCAA GCAAGTCGTC AGATTTAGAG
AGCCTTTATT CCAAAATAAT GATTTTTGAT CGTAAAACAG GTATTCCTCA GGCTTTAGTG
GATGGTACAA GCGTGACTTA CTGGCGTACG GCAGCTATTT CAGCATTGGG AAGTGACTTT
CTGGCAAGAG AAGACGCCAC CAAATTACTG GTATGTGGCA CCGGTCGTCT TGCCTCCTTT
ATGGCACTCG CTCACGCAAG CGTCAGGCCT ATTACAGAGA TTCAGATTTG GGGCCGCAAC
CCAAAAAGTG CTCTCAAGAT TGTCGATATA GTAAAAACCA ATCGCCCCGA ACTGGATGTG
CAGGTATGTG ACAACTTAGA GTCTGCCGTT CGTAATGCCG ACATCATCAG TTGCGCTACG
GGCTCCCCGA GTCCGCTGTT TGACGGTGAC TGGGTACAGG AAGGCACACA TACAGACTTT
GTCGGTAACC ATAATCATGA CAGGCGCGAA TGCGACACTA AATTAATTTT AAAATCAGAT
GTATATGTCG ACTCAAAAAT AAATGTCTTT GCCGAGGCTG GAGAGATCCT GATACCTGTC
GCCGAGGGGC TTTACGACAC GAATGAAGTC AAAGGTGAGC TGTCACAACT GTGTGATCAT
CGACTGAAGG GAAGAACTGA CGATAAACAG ATAACACTAT TTAAAACCGT TGGCACCGCT
TTAGCCGATC TCGTCGGGGC ACAAATAGCA TTTGCAGAGA TAAACCAAAG TAAATAG
|
|---|
| Protein sequence | MLVIDAEQIH QTLNFPKLIS ALKETFSKPA GMPQRQVFSL DESSSHSDAF AVLPSWNEQT
IAVKAFTYFP NNPSKSSDLE SLYSKIMIFD RKTGIPQALV DGTSVTYWRT AAISALGSDF
LAREDATKLL VCGTGRLASF MALAHASVRP ITEIQIWGRN PKSALKIVDI VKTNRPELDV
QVCDNLESAV RNADIISCAT GSPSPLFDGD WVQEGTHTDF VGNHNHDRRE CDTKLILKSD
VYVDSKINVF AEAGEILIPV AEGLYDTNEV KGELSQLCDH RLKGRTDDKQ ITLFKTVGTA
LADLVGAQIA FAEINQSK
|
|---|
| |