| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3497 |
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| Symbol | |
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| ID | 5612721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4261038 |
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| End bp | 4263611 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934449 |
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| Product | ATPase |
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| Protein accession | YP_001475229 |
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| Protein GI | 157376629 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.648443 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0100947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTCG ATCGTATGAC CAATAAATTT CAGACAGCAA TATCCGATGC TCAGTCATTG
GCATTAGGCC GTGATCATCA GTTTATTGAA CCTATACATC TGATGATGGC CCTACTTAAT
CAAGATAATG GTTCAATTCA TCCTCTGCTC ACTCAAGCTG GCATACGAGT AAGTTCACTT
CGTGCACTAC TCAATCAGGA ATTTGAACGA TTATCTCAAG TGGAAGGGAC CGGCGGTGAT
ATTCAATTAT CACAGGCATT GATTAGACTC TTAAATCTGT GTGACAAATT AGCCCAGAAA
CGAAAAGATA AATATATTTC CAGTGAGCTG TTTATCCTGG CGTCGCTTGA GGGAAATGAC
ACTCTTGCAC AGAATTTAAA GAAATCCGGT GCGACTAAAG AGCTGTTAGA AGAGACGATC
AAGCAAATTC GGGCAGGAAA GAACGTTGAC GACCCCAATG CTGAAGATCA ACGTCAAGCC
TTGAAAAAGT ACACCGTAGA TCTGACTGAG CGCGCAGAGC AGGGTAAGCT CGATCCTGTC
ATTGGTCGTG ACGACGAGAT CCGTCGAACT ATTCAAGTAC TGCAGCGTCG AAGTAAAAAT
AATCCAGTTT TAATTGGTGA GCCCGGTGTG GGTAAGACTG CCATTGTCGA GGGGCTGGCC
CAACGAATTG TCAATGGTGA AGTCCCCGAA GGTATCAAGA ACAAACGTGT TCTTTCATTA
GATATGGGCT CATTAGTGGC GGGAGCCAAA TACCGTGGAG AATTCGAAGA GCGACTGAAA
GCCGTTCTTA ATGAGCTTTA TCAGGAAGAA GGTCAGGTCA TTCTATTTAT CGACGAACTG
CATACTATGG TTGGTGCAGG GAAGGGCGAT GGCGCGATGG ATGCAGGAAA CATGCTTAAG
CCAGCGCTGG CCCGTGGTGA TCTGCACTGT GTCGGTGCGA CGACATTAGA TGAGTACCGT
CAGTATATTG AGAAAGATGC AGCATTAGAG AGACGTTTTC AAAAGGTGTT GGTCGAGGAA
CCTAATGTCG AAGATACGAT AGCGATACTG CGTGGACTTA AAGAGCGTTA TGAATTACAT
CACCATGTAG AGATCACCGA TCCAGCAATC GTTGCCGCTG CCAGTATGTC AAATCGTTAC
GTCTCCGATC GCAAGTTACC CGACAAGGCC ATCGACCTTA TCGATGAAGC TGCGTCGAGC
ATACGTATAC AGATAGACTC TAAGCCTGAA CCTTTAGACA AACTAGAGCG ACGCTCGATA
CAGTTAAAGT TGGAGGAGCA GGCATTATCT AAGGAGACCG ATGAAGCGAG TCTGCGTCGC
CTGTATTCTA TACGCAAAGA GTTGAGAAGC GTCGATGCTA AGGCATCAGA ACTGAATGAA
ATTTGGCATA CTGAAAAGGC ATCCTTGGCG GGAACTCAAC ATATAAAAGC GGATCTTGAG
CAGGCAAGGT TAGATCTCGA TGTAGCTCGT CGAGCCAGCG ATCTGACTCG TATGTCTGAA
CTTCAATATG GTCGAATTCC TGAGCTGGAG AAGCAGTTAG ATTTGGCATC TCAAGCAGAA
ATGCAAGATA TGACCTTACT AAGAAATAAA GTAACAGATG TTGAGATAGC AGAAGTACTG
TCAAAAGCGA CGGGAATTCC TGTCTCTAAA ATGCTGGAAG GTGAGAAAGA GAAGCTCCTT
CATATGGAAG AAGCGCTTCA CTCTCGGGTC ATAGGGCAAA ATGAAGCTGT CGATGCCGTT
TCTAACGCTA TTCGTCGGAG CCGTGCCGGG CTTTCAGATC CTGACCGCCC AATCGGTTCA
TTTCTATTCC TGGGCCCTAC CGGGGTCGGC AAGACTGAGC TTTGCAAAGC TTTAGCGAAG
TTTTTATTCG ATACGGAATC AGCATTGGTT CGTATCGATA TGTCGGAGTT TATGGAGAAG
CATTCTGTCG CGCGTTTACT TGGCGCACCT CCTGGATATG TCGGCTATGA AGAGGGAGGT
TATTTAACTG AAGCGGTAAG AAGAAAGCCG TATTCTGTCA TTTTACTCGA TGAGGTCGAG
AAAGCGCATC CGGATGTTTT CAATGTTTTA CTTCAGGTGC TGGATGATGG GCGTTTAACC
GATGGGCAAG GTAGGACTGT AGATTTTAGA AATACCGTGG TAATTATGAC CTCTAATCTT
GGCTCAGATG TTATTCAAGA TAGATTTACA GAACTCTCTT ATGGCGAAAT GAAGTCGGAG
GTGATGAACG TGGTTGTTCA TAGCTTCAGA CCTGAGTTTC TTAACCGAAT CGATGAGACT
GTGGTATTCC ATCCTCTCGA TGAGAAGCAT ATTAAGCATA TTGCGGGTAT TCAGATCGAG
TCATTAAGAC AACGCCTTGC AGAGAAAGAG TTCGAGCTCA TATTGAGTGA CGAAGCTTTA
GCGCTCATTG CACGAGCTGG CTTCGACCCT ATCTATGGTG CCAGACCATT GAAAAGAGCC
TTGCAACAAG AGGTCGAAAA CCCGTTAGCT CAAAAAATAT TGAGTGGTTC TCTTGTACCC
GGGAAGCCGA TTAAAATTGA TTGTGCGGGT TCAGAGCTCG CCTTCGAGCA ATAA
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| Protein sequence | MRLDRMTNKF QTAISDAQSL ALGRDHQFIE PIHLMMALLN QDNGSIHPLL TQAGIRVSSL
RALLNQEFER LSQVEGTGGD IQLSQALIRL LNLCDKLAQK RKDKYISSEL FILASLEGND
TLAQNLKKSG ATKELLEETI KQIRAGKNVD DPNAEDQRQA LKKYTVDLTE RAEQGKLDPV
IGRDDEIRRT IQVLQRRSKN NPVLIGEPGV GKTAIVEGLA QRIVNGEVPE GIKNKRVLSL
DMGSLVAGAK YRGEFEERLK AVLNELYQEE GQVILFIDEL HTMVGAGKGD GAMDAGNMLK
PALARGDLHC VGATTLDEYR QYIEKDAALE RRFQKVLVEE PNVEDTIAIL RGLKERYELH
HHVEITDPAI VAAASMSNRY VSDRKLPDKA IDLIDEAASS IRIQIDSKPE PLDKLERRSI
QLKLEEQALS KETDEASLRR LYSIRKELRS VDAKASELNE IWHTEKASLA GTQHIKADLE
QARLDLDVAR RASDLTRMSE LQYGRIPELE KQLDLASQAE MQDMTLLRNK VTDVEIAEVL
SKATGIPVSK MLEGEKEKLL HMEEALHSRV IGQNEAVDAV SNAIRRSRAG LSDPDRPIGS
FLFLGPTGVG KTELCKALAK FLFDTESALV RIDMSEFMEK HSVARLLGAP PGYVGYEEGG
YLTEAVRRKP YSVILLDEVE KAHPDVFNVL LQVLDDGRLT DGQGRTVDFR NTVVIMTSNL
GSDVIQDRFT ELSYGEMKSE VMNVVVHSFR PEFLNRIDET VVFHPLDEKH IKHIAGIQIE
SLRQRLAEKE FELILSDEAL ALIARAGFDP IYGARPLKRA LQQEVENPLA QKILSGSLVP
GKPIKIDCAG SELAFEQ
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