| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3492 |
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| Symbol | |
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| ID | 5613050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4250016 |
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| End bp | 4250981 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934440 |
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| Product | lipoyl synthase |
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| Protein accession | YP_001475224 |
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| Protein GI | 157376624 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0320] Lipoate synthase |
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| TIGRFAM ID | [TIGR00510] lipoate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000891871 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAGGC CAGAAAGATT ACAACCAGGT GTCAAGCTTA GGGATGCAGA TAAAGTCGCT
CGTATCCCTG TAAAAGTGGT TCCCTCTGAA CGCGAAACAA TGCTGCGTAA GCCTGATTGG
CTCAGAGTAA AATTACCGGC ATCCAGCCAA CGTATCGATG ACATAAAAAA AGCGTTACGT
AAAAATGAGC TTCACTCAGT GTGTGAAGAG GCATCATGTC CGAACCTTGC CGAGTGTTTT
AACCACGGAA CGGCAACATT CATGATATTG GGCGCGATCT GTACCCGACG TTGCCCGTTT
TGTGACGTTG CCCATGGACG CCCATTGAAG CCGGATGCTA ATGAGCCTAA GAAGATGGCT
CAAACTATCA AAGATATGAA GCTTAAATAT GTAGTGATCA CATCTGTCGA TCGAGACGAT
CTTCGCGATG GTGGAGCACA GCATTTTGCC GATTGTATCC GGGAAATTCG CTTACTTAAT
CCGAGCATAA AAATTGAGAT CTTAGTTCCA GATTTCCGAG GCCGTATCGA TGCTGCTCTG
GACATTTTAG CGACTGAGCC ACCGGATGTA TTCAATCACA ACCTTGAAAC AGCGCCGATG
CATTACCGCA AAGCGAGACC AGGTGCGAAT TATCAATGGT CGTTGGATCT GCTCAAGAAG
TTCAAAGAGC GTCATCCTGA TATACCGACT AAATCAGGTT TGATGATGGG CTTAGGCGAG
ACCAACGATC AGATAGCCGA GGTATTAAAA GACCTACGCG CTCATAACGT TGAGATGCTT
ACATTGGGCC AGTACCTGCA ACCTTCAAAG TTCCATCTTC GTGTTGAGCG CTATGTCCCG
CCAGCAGAAT TTGATGAGCT TAGAGAGTTT GCCGAGAGCA TCGGCTTTAC TCATGCAGCT
TGTGGCCCTA TGGTTCGGTC AAGCTACCAT GCCGATCTTC AAGCTCAAGG CAAAGAAGTG
AAATAA
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| Protein sequence | MSRPERLQPG VKLRDADKVA RIPVKVVPSE RETMLRKPDW LRVKLPASSQ RIDDIKKALR
KNELHSVCEE ASCPNLAECF NHGTATFMIL GAICTRRCPF CDVAHGRPLK PDANEPKKMA
QTIKDMKLKY VVITSVDRDD LRDGGAQHFA DCIREIRLLN PSIKIEILVP DFRGRIDAAL
DILATEPPDV FNHNLETAPM HYRKARPGAN YQWSLDLLKK FKERHPDIPT KSGLMMGLGE
TNDQIAEVLK DLRAHNVEML TLGQYLQPSK FHLRVERYVP PAEFDELREF AESIGFTHAA
CGPMVRSSYH ADLQAQGKEV K
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