| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3488 |
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| Symbol | |
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| ID | 5612733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4246679 |
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| End bp | 4247476 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934436 |
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| Product | rare lipoprotein A |
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| Protein accession | YP_001475220 |
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| Protein GI | 157376620 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0797] Lipoproteins |
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| TIGRFAM ID | [TIGR00413] rare lipoprotein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000216134 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATACTCA ATAAAAACAC CAGATGGGTA ATATCCCTAT TTTTCGCACT CACACTCTCT
GCATGTTCGA GCTCTAACGG TGGGCGTTAT GATATGGCGA ATGATAAGGC ACCGAGCAGC
GCACCGGATG TAACCAGAGT CGAAGATGCC CATCCTAAAT ACGAACCCTA TAGCCGTGGA
GGGAATAAGA AGAACTACAC AGTGCTTGGA AAAGGGTACC AGGTGATGGA CTCGGGCAAA
GGGTATCAAG CAACGGGCAT TGCCTCATGG TACGGCTCCA AATTTCATGG ACATTTGACC
TCTAATGGCG AAACGTACGA CATGTACTCT ATGTCTGCAG CCCACAAAAC ACTTCCTTTA
CCCAGCTATG TCAAAGTGAC GAATCTGGAT AACAGTAAAC AAGTTATCGT GAGAGTGAAC
GACAGGGGCC CCTTTCATGA GGGGCGGATC ATAGATCTCT CATACGCGGC AGCGCACAGG
CTGGACGTAC TAAAAACGGG GACGGCAAAG GTAGAGATAG AGGTCATTTA TATCGAAAAC
CCAGAATCTA TCGCACTTGC CGAACTGAAA GAGACGAAGT CACACTACAT TCAGATATTA
GCCTCTTCGA ATAAAAAGAA GATCGATGCA CTTGCTAAAA ACCTTGAAAC GAAATACCTG
ATCAAAACCA GACTCGTGTC GGCCAATAAT CTGTACCGAC TTCAGTTGGG GCCAATAGGA
CAACGCCAAA TCGCGACCAA ACTGAATGAT AAACTAAAGA ACGATGGGTA TCCCCAAAGC
TACCTGATCT CTGAGTAG
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| Protein sequence | MILNKNTRWV ISLFFALTLS ACSSSNGGRY DMANDKAPSS APDVTRVEDA HPKYEPYSRG
GNKKNYTVLG KGYQVMDSGK GYQATGIASW YGSKFHGHLT SNGETYDMYS MSAAHKTLPL
PSYVKVTNLD NSKQVIVRVN DRGPFHEGRI IDLSYAAAHR LDVLKTGTAK VEIEVIYIEN
PESIALAELK ETKSHYIQIL ASSNKKKIDA LAKNLETKYL IKTRLVSANN LYRLQLGPIG
QRQIATKLND KLKNDGYPQS YLISE
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