| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3487 |
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| Symbol | |
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| ID | 5612732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4245673 |
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| End bp | 4246692 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934435 |
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| Product | lytic murein transglycosylase B |
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| Protein accession | YP_001475219 |
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| Protein GI | 157376619 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.153409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000197037 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAATAT CTTCTAAACT ACTGGCACCA CTGCTCTTGG CCACACTATC TTTCGGCACT
TCTGCAAATG CCAGCGGTTC CAGGTTAGCT CCGGATGAGG CGAGTGCAGC GACATTAAAA
TCTGAGTTTT TACAGACTCA ATTAGCCTTA GGCTTTTCCG AAAAAGAGGT AGAAACTTTT
CTTGCTACGG CCAAATTTGA TCAAGCAGTT ATTGATGCGA TGACTAAGCC TTGGGAAGCT
AAACCTTGGC ATCAGTACTA CCCCATTTTT CTCACAGAAA AACGCTTGAA TGCCGGACTC
GATTTTTGGC AGAAACATGA AGTCACGGTG AGTCGAGCGG CCAAAGAGTT TGGTGTAGAC
CCGGAAATTA TTATCGCGAT TATCGGTATT GAAACCTTCT ACGGTGGCTA TATGGGCAAC
TACCCTGTCG TCGATGCCCT GTATACATTA GGCTTTTATT ACCCCCCAAG GGCAACATTT
TTCAGAAAAG AGCTGAGTAA CTTACAAACT CTGACGAAAG AAGAAAGGCT TGATATCAAT
AACCTAAATG GCTCCTATGC CGGCGCCATG GGTTTCGGGC AATTTATTCC GTCCAGCTAT
CGCCATTACG CAGTCGATTT TGACAATGAC GGACAAAGAG ATCTGTTGAA CAACCCGGTC
GATGCAATCG GCAGTGTCGC AAACTACTTT CATCAACATG GCTGGGTCGA AAAGGCCCCG
GTAGCGATAC CGCTAACCAT GTCTGCCGAA TTGCCCTCAG ATTTAAAAGT ATGGGCAGGT
GAGCGTTTAC ATTACCAGGT GTCGGATATT CTATCTCCAT CTGTTTCCTT AGCTGAGTCC
ATTGACCTGG ATATTTCCCA GCCCGCCTTG GTTATAGATC TAGAACAGGA TTTAGGCAGC
GATTATTGGC TGGGTTTAAA TAACTTTTAT GTGATCACTC GCTATAACCG CAGCCCATTG
TATGCAATGG CAGTTTATCA ATTCAGTCAG AAACTAAAGA AAGCTCATGA TACTCAATAA
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| Protein sequence | MKISSKLLAP LLLATLSFGT SANASGSRLA PDEASAATLK SEFLQTQLAL GFSEKEVETF
LATAKFDQAV IDAMTKPWEA KPWHQYYPIF LTEKRLNAGL DFWQKHEVTV SRAAKEFGVD
PEIIIAIIGI ETFYGGYMGN YPVVDALYTL GFYYPPRATF FRKELSNLQT LTKEERLDIN
NLNGSYAGAM GFGQFIPSSY RHYAVDFDND GQRDLLNNPV DAIGSVANYF HQHGWVEKAP
VAIPLTMSAE LPSDLKVWAG ERLHYQVSDI LSPSVSLAES IDLDISQPAL VIDLEQDLGS
DYWLGLNNFY VITRYNRSPL YAMAVYQFSQ KLKKAHDTQ
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