| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3484 |
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| Symbol | |
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| ID | 5612835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4241969 |
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| End bp | 4242439 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934432 |
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| Product | rRNA large subunit methyltransferase |
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| Protein accession | YP_001475216 |
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| Protein GI | 157376616 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1576] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000336055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000393257 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAAGTTAC AGTTAATCGC AGTTGGCACT CGTATGCCAG ATTGGGTCAC CACAGGTTTC
CAGGAATACC AACGTCGTTT TCCCAGAGAT ATGGCACTCG AACTGGTTGA GATCCCTGCG
GGGAAAAGAG GCAAGAATGC CGATATTGCT CGAATTCTTC ATAAAGAAGG CGAGCAGATG
TTGGCTGCTA TTCCCAAAAG TAATCATATC GTAAGCTTAG ATCTTCCGGG CAAAACCTGG
ACGACACCAG ATCTTGCCAC TCAACTTGGT AAGTGGCAGT TAGATGGGCG AGATGTGAGC
CTGCTCATTG GTGGACCCGA AGGTCTTGCC CCTGCTTGTA AACAAGCAGC ATCTCAAAGC
TGGTGCCTAT CCGCTTTGAC TCTACCCCAT CCATTAGTCA GAGTTGTTGT CGCCGAAAGC
CTTTATCGAG CTTGGAGCGT CAACAATAAT CACCCTTACC ATAGAGAGTA G
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| Protein sequence | MKLQLIAVGT RMPDWVTTGF QEYQRRFPRD MALELVEIPA GKRGKNADIA RILHKEGEQM
LAAIPKSNHI VSLDLPGKTW TTPDLATQLG KWQLDGRDVS LLIGGPEGLA PACKQAASQS
WCLSALTLPH PLVRVVVAES LYRAWSVNNN HPYHRE
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